miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51683_ptc-miR169z:pmrd
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 tagtagaatgcagccaagaatgatttgccggcgccggccagcacttgttgcaaagcaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagtagaatgcagccaagaatgatttgccggcgccggccagcacttgttgcaaagcaact 60
Query: 61 aagcaagggcttcaaatgtttttggcaccccggcaagttgttcttggctacatttgga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcaagggcttcaaatgtttttggcaccccggcaagttgttcttggctacatttgga 118
>52491_ptc-miRf10669-akr:pmrd
Length = 110
Score = 218 bits (110), Expect = 7e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaagaatgatttgccggcgccggccagcacttgttgcaaagcaactaagca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaatgcagccaagaatgatttgccggcgccggccagcacttgttgcaaagcaactaagca 60
Query: 66 agggcttcaaatgtttttggcaccccggcaagttgttcttggctacattt 115
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agggcttcaaatgtttttggcaccccggcaagttgttcttggctacattt 110
>54806_vvi-miR169d:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaagaatgatttgccgg 31
||||||||||||||||||||||||||
Sbjct: 6 gaatgcagccaagaatgatttgccgg 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 accccggcaagttgttcttggctacatttg 116
|||| |||||||||| ||||||||||||||
Sbjct: 85 accctggcaagttgtccttggctacatttg 114
>51664_ptc-miR169g:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 agtagaatgcagccaagaatgatttgccggc 32
||||||||||||||||| |||| ||||||||
Sbjct: 2 agtagaatgcagccaaggatgacttgccggc 32
>55004_zma-miR169b:pmrd
Length = 156
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cggcaagttgttcttggctaca 112
||||||||||||||||||||||
Sbjct: 117 cggcaagttgttcttggctaca 138
>55003_zma-miR169a:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cggcaagttgttcttggctaca 112
||||||||||||||||||||||
Sbjct: 91 cggcaagttgttcttggctaca 112
>54821_vvi-miR169s:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 cccggcaagttgttcttggctacatt 114
||||||||||||||| ||||||||||
Sbjct: 64 cccggcaagttgttcctggctacatt 89
>54805_vvi-miR169c:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 agtagaatgcagccaagaatgatttgccgg 31
||||||||||||||||| |||| |||||||
Sbjct: 4 agtagaatgcagccaaggatgacttgccgg 33
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 90 ccggcaagttgttcttggctacatt 114
|||||||||||| ||||||||||||
Sbjct: 56 ccggcaagttgtccttggctacatt 80
>54803_vvi-miR169a:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 accccggcaagttgttcttggctacatttg 116
|||| |||||||||| ||||||||||||||
Sbjct: 87 accctggcaagttgtccttggctacatttg 116
>48876_osa-miR169a:pmrd
Length = 173
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ggcaagttgttcttggctacat 113
||||||||||||||||||||||
Sbjct: 114 ggcaagttgttcttggctacat 135
>55023_zma-miR169u:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 cggcaagttgttcttggcta 110
||||||||||||||||||||
Sbjct: 71 cggcaagttgttcttggcta 90
>55022_zma-miR169t:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 cggcaagttgttcttggcta 110
||||||||||||||||||||
Sbjct: 97 cggcaagttgttcttggcta 116
>52003_ptc-miRf10181-akr:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 92 ggcaagttgttcttggctacattt 115
|||| |||||||||||||||||||
Sbjct: 86 ggcaggttgttcttggctacattt 109
>51659_ptc-miR169b:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 92 ggcaagttgttcttggctacattt 115
|||| |||||||||||||||||||
Sbjct: 87 ggcaggttgttcttggctacattt 110
