miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01007603.1/205939-205816 3694:Populus
trichocarpa
Length = 124
Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 tagtagaatgcagccaagaatgatttgccggcgccggccagcacttgttgcaaagcaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tagtagaatgcagccaagaatgatttgccggcgccggccagcacttgttgcaaagcaact 61
Query: 61 aagcaagggcttcaaatgtttttggcaccccggcaagttgttcttggctacatttgga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aagcaagggcttcaaatgtttttggcaccccggcaagttgttcttggctacatttgga 119
>RF00645;MIR169_2;CAAP02002239.1/46319-46198 29760:Vitis vinifera
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaagaatgatttgccgg 31
||||||||||||||||||||||||||
Sbjct: 7 gaatgcagccaagaatgatttgccgg 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 accccggcaagttgttcttggctacatttg 116
|||| |||||||||| ||||||||||||||
Sbjct: 86 accctggcaagttgtccttggctacatttg 115
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 ccggcaagttgttcttggctacatt 114
|||||||||||||||||||||||||
Sbjct: 72 ccggcaagttgttcttggctacatt 96
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya (papaya)
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 ccggcaagttgttcttggctacat 113
||||||||||||||||||||||||
Sbjct: 89 ccggcaagttgttcttggctacat 112
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 agtagaatgcagccaagaatgatttgccggc 32
||||||||||||||||| |||| ||||||||
Sbjct: 3 agtagaatgcagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 90 ccggcaagttgttcttggctacattt 115
||||||||||||||||| ||||||||
Sbjct: 59 ccggcaagttgttcttgactacattt 84
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 agtagaatgcagccaagaatgatttgccgg 31
||||||||||||||||| |||| |||||||
Sbjct: 3 agtagaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 cccggcaagttgttcttggctacatt 114
||||||||||||||| ||||||||||
Sbjct: 63 cccggcaagttgttcctggctacatt 88
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cggcaagttgttcttggctaca 112
||||||||||||||||||||||
Sbjct: 83 cggcaagttgttcttggctaca 104
>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ggcaagttgttcttggctacat 113
||||||||||||||||||||||
Sbjct: 88 ggcaagttgttcttggctacat 109
