miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 10 tgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatctgatt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatctgatt 60
Query: 70 gagccgtgccaatatcgc 87
||||||||||||||||||
Sbjct: 61 gagccgtgccaatatcgc 78
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 79.8 bits (40), Expect = 6e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 10 tgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatctgatt 69
||||||||| | ||||||||||| ||||| ||||||||||| || |||| ||||||||
Sbjct: 10 tgatgttgggacggctcaatcaaaccaaagatctcaatggttgagtcctttaatctgatt 69
Query: 70 gagccgtgccaatatc 85
||||||||||||||||
Sbjct: 70 gagccgtgccaatatc 85
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 76/89 (85%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 3 ggaaatttgatgttggcagagctcaatcaaatcaaagcactcaa-tg---gttgggttct 58
|||||| ||||||||||| | ||||||||||| ||||||||| || | || |||||
Sbjct: 3 ggaaatctgatgttggcatggttcaatcaaatcgaagcactcagctgcctgctgagttct 62
Query: 59 ttcatctgattgagccgtgccaatatcgc 87
|| ||||||||||||||||||||||||||
Sbjct: 63 ttaatctgattgagccgtgccaatatcgc 91
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 23 gctcaatcaaatcaaagcactcaatggtt--gggttctttcatctgattgagccgtgcca 80
|||||||||||||||| | | ||| |||| |||| |||| |||||||||||||||||||
Sbjct: 23 gctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgattgagccgtgcca 82
Query: 81 atatc 85
|||||
Sbjct: 83 atatc 87
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 50 ttgggttctttcatctgattgagccgtgccaatatc 85
|||||| |||| ||||||||||||||||||||||||
Sbjct: 51 ttgggtcctttaatctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 49 gttgggttctttcatctgattgagccgtgccaatatc 85
||||||| ||| ||||||||||||||||||||||||
Sbjct: 47 gttgggtcttttaatctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatc 100
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 tcatctgattgagccgtgccaatatc 85
|||||||||||||||||| |||||||
Sbjct: 49 tcatctgattgagccgtgtcaatatc 74
