miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51689_ptc-miR171f:pmrd
Length = 130
Score = 210 bits (106), Expect = 2e-55
Identities = 122/130 (93%)
Strand = Plus / Plus
Query: 1 gtgtcattgcgatgttggcccggttcactcagagaaaagacaccannnnnnnncaagaag 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 gtgtcattgcgatgttggcccggttcactcagagaaaagacaccattttttttcaagaag 60
Query: 61 atcatcaaagcttgaaagaataatggtggtcggtcgtctctgattgagccgtgccaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcatcaaagcttgaaagaataatggtggtcggtcgtctctgattgagccgtgccaatat 120
Query: 121 cttagtgctc 130
||||||||||
Sbjct: 121 cttagtgctc 130
>48899_osa-miR171e:pmrd
Length = 119
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatcttagtgctc 130
||||||||||||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatcttagtgctc 118
>55032_zma-miR171e:pmrd
Length = 126
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatcttagt 126
||||||||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatcttagt 112
>55037_zma-miR171j:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 tctctgattgagccgtgccaatatc 121
|||||||||||||||||||||||||
Sbjct: 86 tctctgattgagccgtgccaatatc 110
>54460_sbi-miR171i:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatctt 123
|||||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatctt 90
>54453_sbi-miR171b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 tctctgattgagccgtgccaatatc 121
|||||||||||||||||||||||||
Sbjct: 89 tctctgattgagccgtgccaatatc 113
>55031_zma-miR171d:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatct 122
||||||||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatct 103
>54680_tae-miR170b:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 ctctgattgagccgtgccaatatc 121
||||||||||||||||||||||||
Sbjct: 71 ctctgattgagccgtgccaatatc 94
>54455_sbi-miR171d:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatct 122
||||||||||||||||||||||||
Sbjct: 113 tctgattgagccgtgccaatatct 136
>48898_osa-miR171d:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatct 122
||||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatct 126
>48407_bra-miR171e:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatcttagtgctc 130
||||||||||||| |||||||||| |||||||
Sbjct: 82 tctgattgagccgcgccaatatctcagtgctc 113
>48369_bna-miR171g:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatcttagtgctc 130
||||||||||||| |||||||||| |||||||
Sbjct: 76 tctgattgagccgcgccaatatctcagtgctc 107
>48368_bna-miR171f:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatcttagtgctc 130
||||||||||||| |||||||||| |||||||
Sbjct: 82 tctgattgagccgcgccaatatctcagtgctc 113
>54836_vvi-miR171i:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>54828_vvi-miR171a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 58 tctgattgagccgtgccaatatc 80
>51691_ptc-miR171h:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>51690_ptc-miR171g:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>51688_ptc-miR171e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatc 115
>48905_osa-miR171n:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48900_osa-miR171f:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>48894_osa-miR170b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>46879_aqc-miR171d:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatctt 123
|||||||||||||||||||||||
Sbjct: 84 tgattgagccgtgccaatatctt 106
>46877_aqc-miR171b:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tctgattgagccgtgccaatatc 121
|||||||||||||||||||||||
Sbjct: 53 tctgattgagccgtgccaatatc 75
>46876_aqc-miR171a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatctt 123
|||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctt 102
>54551_sly-miR171a:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatct 122
||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatct 108
>51692_ptc-miR171i:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatct 122
||||||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatct 121
>48723_mtr-miR171g:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatct 122
||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatct 101
>48722_mtr-miR171d:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatct 122
||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatct 101
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55036_zma-miR171i:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>55033_zma-miR171f:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>55029_zma-miR171b:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>54832_vvi-miR171e:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tctctgattgagccgtgccaatatc 121
||||||||||||||| |||||||||
Sbjct: 66 tctctgattgagccgcgccaatatc 90
>54831_vvi-miR171d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>54830_vvi-miR171c:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>54462_sbi-miR171k:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>54452_sbi-miR171a:pmrd
Length = 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatc 142
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatc 83
>51685_ptc-miR171b:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>51684_ptc-miR171a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>51346_ppe-miR171:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>51345_ppe-miR170:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>48897_osa-miR171c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>48896_osa-miR171b:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>48403_bra-miR171a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>48386_bol-miR171a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48367_bna-miR171e:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>48366_bna-miR171d:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48312_bdi-miR171c:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatc 84
>46979_ath-miR171c:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>46880_aqc-miR171e:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 101 tgattgagccgtgccaatatc 121
|||||||||||||||||||||
Sbjct: 21 tgattgagccgtgccaatatc 1
