miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51692_ptc-miR171i:pmrd
Length = 129
Score = 107 bits (54), Expect = 2e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1 gagtgactatgatattggcctggttcactcagatcacgacttcagagcaaagtg 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtgactatgatattggcctggttcactcagatcacgacttcagagcaaagtg 54
Score = 97.6 bits (49), Expect = 2e-21
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 81 gttttatgttcgtttgatttgattgagccgtgccaatatctcagtactc 129
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gttttatgttcgtttgatttgattgagccgtgccaatatctcagtactc 129
>55031_zma-miR171d:pmrd
Length = 121
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
||||||||||||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctcagtactc 111
>54455_sbi-miR171d:pmrd
Length = 154
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
||||||||||||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatctcagtactc 144
>54551_sly-miR171a:pmrd
Length = 122
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctcagt 125
||||||||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatctcagt 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcaga 33
||||||||||||||||||||||||
Sbjct: 15 tgatattggcctggttcactcaga 38
>55032_zma-miR171e:pmrd
Length = 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
|||||||||||||||||||||| |||||||
Sbjct: 87 tgattgagccgtgccaatatcttagtactc 116
>48723_mtr-miR171g:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctca 123
||||||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatctca 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gatattggcctggttcactcaga 33
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
>48722_mtr-miR171d:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctca 123
||||||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatctca 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gatattggcctggttcactcaga 33
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
>48407_bra-miR171e:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcagatc 35
||||||||||||||||||||||||||
Sbjct: 17 tgatattggcctggttcactcagatc 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagt 125
||||||||||| ||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctcagt 109
>48368_bna-miR171f:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcagatc 35
||||||||||||||||||||||||||
Sbjct: 17 tgatattggcctggttcactcagatc 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagt 125
||||||||||| ||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctcagt 109
>46977_ath-miR171a:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcagatc 35
||||||||||||||||||||||||||
Sbjct: 16 tgatattggcctggttcactcagatc 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
||||||||||| ||||||||||||||||||
Sbjct: 88 tgattgagccgcgccaatatctcagtactc 117
>48898_osa-miR171d:pmrd
Length = 135
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcag 124
|||||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctcag 129
>48369_bna-miR171g:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcagat 34
|||||||||||||||||||||||||
Sbjct: 20 tgatattggcctggttcactcagat 44
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagt 125
||||||||||| ||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatctcagt 103
>46980_ath-miR171m:pmrd
Length = 92
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gatattggcctggttcactcagatc 35
|||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagatc 25
>46975_ath-miR170m:pmrd
Length = 92
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gatattggcctggttcactcagatc 35
|||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagatc 25
>51346_ppe-miR171:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 atttgattgagccgtgccaatatc 120
||||||||||||||||||||||||
Sbjct: 64 atttgattgagccgtgccaatatc 87
>51345_ppe-miR170:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 atttgattgagccgtgccaatatc 120
||||||||||||||||||||||||
Sbjct: 64 atttgattgagccgtgccaatatc 87
>46979_ath-miR171c:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 atttgattgagccgtgccaatatc 120
||||||||||||||||||||||||
Sbjct: 84 atttgattgagccgtgccaatatc 107
>46879_aqc-miR171d:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatct 121
||||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatct 105
>46876_aqc-miR171a:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatct 121
||||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatct 101
>55029_zma-miR171b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>54831_vvi-miR171d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>54830_vvi-miR171c:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>54462_sbi-miR171k:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>54452_sbi-miR171a:pmrd
Length = 161
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatc 142
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatc 83
>51691_ptc-miR171h:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 90 tcgtttgatttgattgagccgtgccaatatc 120
|||||| || |||||||||||||||||||||
Sbjct: 61 tcgtttaatctgattgagccgtgccaatatc 91
>51685_ptc-miR171b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatc 91
>51684_ptc-miR171a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatc 92
>48897_osa-miR171c:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>48896_osa-miR171b:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>48403_bra-miR171a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>48386_bol-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>48367_bna-miR171e:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>48366_bna-miR171d:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>48312_bdi-miR171c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>46880_aqc-miR171e:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1
>55039_zma-miR171m:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 ttgattgagccgtgccaatatc 120
||||||||||||||||||||||
Sbjct: 92 ttgattgagccgtgccaatatc 113
>55036_zma-miR171i:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 ttgattgagccgtgccaatatc 120
||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatc 85
>55033_zma-miR171f:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 ttgattgagccgtgccaatatc 120
||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatc 135
>55024_zma-miR170m:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 ttgattgagccgtgccaatatc 120
||||||||||||||||||||||
Sbjct: 94 ttgattgagccgtgccaatatc 115
>54460_sbi-miR171i:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatct 121
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatct 89
>51689_ptc-miR171f:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatct 121
||||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatct 122
>48899_osa-miR171e:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatct 121
||||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatct 110
>55037_zma-miR171j:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatc 110
>54836_vvi-miR171i:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>54828_vvi-miR171a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>54680_tae-miR170b:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94
>54453_sbi-miR171b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatc 80
>51690_ptc-miR171g:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>51688_ptc-miR171e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>48905_osa-miR171n:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48900_osa-miR171f:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatc 117
>48894_osa-miR170b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>46877_aqc-miR171b:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatc 120
|||||||||||||||||||||
Sbjct: 55 tgattgagccgtgccaatatc 75
