miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51695_ptc-miR171l:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 60
Query: 61 ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 112
>51798_ptc-miR479:pmrd
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 15 ggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttcttcactcatga 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttcttcactcatga 60
Query: 75 agacgagccgaatcaatatcactct 99
|||||||||||||||||||||||||
Sbjct: 61 agacgagccgaatcaatatcactct 85
>51696_ptc-miR171m:pmrd
Length = 101
Score = 81.8 bits (41), Expect = 1e-16
Identities = 91/106 (85%), Gaps = 5/106 (4%)
Strand = Plus / Plus
Query: 4 gaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttc 63
|||| ||||| || ||| ||||| ||||||||||||||||| || ||||| |||||||
Sbjct: 1 gaagcagacatggcgtggtattgatccggctcatcttctgt--atttgcatcagaagttc 58
Query: 64 ttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 109
||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 59 ttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 101
>51697_ptc-miR171n:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 72 tgaagacgagccgaatcaatatcactcttgtatgcttc 109
|||||||||||||||||||||||||||||||| |||||
Sbjct: 64 tgaagacgagccgaatcaatatcactcttgtacgcttc 101
>54894_vvi-miR479:pmrd
Length = 94
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 74 aagacgagccgaatcaatatcactcttgtatgcttc 109
||||||||||||| ||||||||||||||||||||||
Sbjct: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 7 gtagacacggtgtgatattggtccggctcatcttct 42
||||||| |||||| ||||||| |||||||||||||
Sbjct: 1 gtagacatggtgtggtattggttcggctcatcttct 36
>48568_gma-miR171b:pmrd
Length = 92
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 75 agacgagccgaatcaatatcactcttgtatgctt 108
|||||||||||||||||||||||||||| |||||
Sbjct: 59 agacgagccgaatcaatatcactcttgtttgctt 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 tagacacggtgtgatattggtccggctcatctt 40
||||||||| ||||||||||| |||||||||||
Sbjct: 1 tagacacggcgtgatattggtacggctcatctt 33
>48721_mtr-miR171b:pmrd
Length = 135
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 77 acgagccgaatcaatatcactcttgtatgcttc 109
|||||||||||||||||||||||||| ||||||
Sbjct: 1 acgagccgaatcaatatcactcttgtttgcttc 33
>46854_ach-miR171:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 cgagccgaatcaatatcactcttgtat 104
|||||||||||||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgtat 115
