miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51696_ptc-miR171m:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 gaagcagacatggcgtggtattgatccggctcatcttctgtatttgcatcagaagttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagcagacatggcgtggtattgatccggctcatcttctgtatttgcatcagaagttctt 60
Query: 61 cgctgaagacgagccgaatcaatatcactcttgtacgcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgaagacgagccgaatcaatatcactcttgtacgcttc 101
>51697_ptc-miR171n:pmrd
Length = 101
Score = 184 bits (93), Expect = 8e-48
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 1 gaagcagacatggcgtggtattgatccggctcatcttctgtatttgcatcagaagttctt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1 gaagcagacatggcgtggtattgatccggctcttcttctgtatttgcatcagaagttttt 60
Query: 61 cgctgaagacgagccgaatcaatatcactcttgtacgcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgaagacgagccgaatcaatatcactcttgtacgcttc 101
>51695_ptc-miR171l:pmrd
Length = 112
Score = 81.8 bits (41), Expect = 9e-17
Identities = 91/106 (85%), Gaps = 5/106 (4%)
Strand = Plus / Plus
Query: 1 gaagcagacatggcgtggtattgatccggctcatcttctgt--atttgcatcagaagttc 58
|||| ||||| || ||| ||||| ||||||||||||||||| || ||||| |||||||
Sbjct: 4 gaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttc 63
Query: 59 ttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 101
||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 64 ttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 109
>51798_ptc-miR479:pmrd
Length = 85
Score = 65.9 bits (33), Expect = 5e-12
Identities = 68/78 (87%), Gaps = 5/78 (6%)
Strand = Plus / Plus
Query: 19 tattgatccggctcatcttctgt--atttgcatcagaagttcttcgct---gaagacgag 73
||||| ||||||||||||||||| || ||||| |||||||||| || |||||||||
Sbjct: 8 tattggtccggctcatcttctgtgcataagcatctgaagttcttcactcatgaagacgag 67
Query: 74 ccgaatcaatatcactct 91
||||||||||||||||||
Sbjct: 68 ccgaatcaatatcactct 85
>54894_vvi-miR479:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 66 aagacgagccgaatcaatatcactcttgtacgcttc 101
||||||||||||| |||||||||||||||| |||||
Sbjct: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 6 agacatggcgtggtattgatccggctcatcttct 39
|||||||| ||||||||| | |||||||||||||
Sbjct: 3 agacatggtgtggtattggttcggctcatcttct 36
>48568_gma-miR171b:pmrd
Length = 92
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 67 agacgagccgaatcaatatcactcttgt 94
||||||||||||||||||||||||||||
Sbjct: 59 agacgagccgaatcaatatcactcttgt 86
>48721_mtr-miR171b:pmrd
Length = 135
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 acgagccgaatcaatatcactcttgt 94
||||||||||||||||||||||||||
Sbjct: 1 acgagccgaatcaatatcactcttgt 26
>46854_ach-miR171:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 70 cgagccgaatcaatatcactcttgta 95
||||||||||||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgta 114
>55038_zma-miR171k:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 7 gacatggcgtggtattgatccggctcat 34
||||||||||||||||| | ||||||||
Sbjct: 15 gacatggcgtggtattgtttcggctcat 42
>55035_zma-miR171h:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 7 gacatggcgtggtattgatccggctcat 34
||||||||||||||||| | ||||||||
Sbjct: 15 gacatggcgtggtattgtttcggctcat 42
>54456_sbi-miR171e:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 7 gacatggcgtggtattgatccggctcat 34
||||||||||||||||| | ||||||||
Sbjct: 15 gacatggcgtggtattgtttcggctcat 42
