miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 163 bits (82), Expect = 5e-40
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 1 gaatggaggctgatccaagatcctcctcgagtgcgaaacaaatgccgnnnnnnnggtttt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9 gaatggaggctgatccaagatcctcctcgagtgcgaaacaaatgccgtttttttggtttt 68
Query: 61 gtgtttgctctcttggggggtctcggaccaggcttcattcctc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtgtttgctctcttggggggtctcggaccaggcttcattcctc 111
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 ggtctcggaccaggcttcattcctc 103
|||||||||||||||||||||||||
Sbjct: 59 ggtctcggaccaggcttcattcctc 83
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 tggggggtctcggaccaggcttcattcc 101
|||||||| |||||||||||||||||||
Sbjct: 78 tggggggtttcggaccaggcttcattcc 105
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcctc 103
|||||||||||||||||||||||
Sbjct: 86 tctcggaccaggcttcattcctc 108
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcctc 103
|||||||||||||||||||||||
Sbjct: 154 tctcggaccaggcttcattcctc 176
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcctc 103
|||||||||||||||||||||||
Sbjct: 78 tctcggaccaggcttcattcctc 100
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcctc 103
|||||||||||||||||||||||
Sbjct: 139 tctcggaccaggcttcattcctc 161
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 ggtctcggaccaggcttcattcc 101
|||||||||||||||||||||||
Sbjct: 64 ggtctcggaccaggcttcattcc 86
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 ggtctcggaccaggcttcattcc 101
|||||||||||||||||||||||
Sbjct: 69 ggtctcggaccaggcttcattcc 91
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 ggtctcggaccaggcttcattcc 101
|||||||||||||||||||||||
Sbjct: 58 ggtctcggaccaggcttcattcc 80
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 ggtctcggaccaggcttcattcc 101
|||||||||||||||||||||||
Sbjct: 58 ggtctcggaccaggcttcattcc 80
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcctc 103
|||||||||||||||||||||||
Sbjct: 108 tctcggaccaggcttcattcctc 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaatggaggctgatccaagatc 22
||||||||||||||||||||||
Sbjct: 9 gaatggaggctgatccaagatc 30
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcct 102
||||||||||||||||||||||
Sbjct: 117 tctcggaccaggcttcattcct 138
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcct 102
||||||||||||||||||||||
Sbjct: 290 tctcggaccaggcttcattcct 311
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcct 102
||||||||||||||||||||||
Sbjct: 297 tctcggaccaggcttcattcct 318
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcct 102
||||||||||||||||||||||
Sbjct: 143 tctcggaccaggcttcattcct 164
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tctcggaccaggcttcattcct 102
||||||||||||||||||||||
Sbjct: 95 tctcggaccaggcttcattcct 116
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctcggaccaggcttcattcctc 103
||||||||||||||||||||||
Sbjct: 72 ctcggaccaggcttcattcctc 93
