miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54457_sbi-miR171f:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 tgagagaataagacgacatggcgtgatgttgtttcggctcatgcatatccttcttgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagagaataagacgacatggcgtgatgttgtttcggctcatgcatatccttcttgagtg 60
Query: 61 tatcatcaggaaagaggcgatgagccgaaccaatatcactcatgtattcttcattcata 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatcatcaggaaagaggcgatgagccgaaccaatatcactcatgtattcttcattcata 119
>48902_osa-miR171h:pmrd
Length = 101
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 81 tgagccgaaccaatatcactcatgtattcttcattca 117
|||||||||||||||||||||||||||||||||||||
Sbjct: 55 tgagccgaaccaatatcactcatgtattcttcattca 91
>55038_zma-miR171k:pmrd
Length = 104
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 81 tgagccgaaccaatatcactcatgtattcttcattc 116
||||||||||||||||||||||||||||||||||||
Sbjct: 66 tgagccgaaccaatatcactcatgtattcttcattc 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 aagacgacatggcgtgatgttgtttcggctcatg 43
|||||||||||||||| | |||||||||||||||
Sbjct: 10 aagacgacatggcgtggtattgtttcggctcatg 43
>54456_sbi-miR171e:pmrd
Length = 124
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 81 tgagccgaaccaatatcactcatgtattcttcattc 116
||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgagccgaaccaatatcactcatgtattcttcattc 121
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 aagacgacatggcgtgatgttgtttcggctcatg 43
|||||||||||||||| | |||||||||||||||
Sbjct: 10 aagacgacatggcgtggtattgtttcggctcatg 43
>55035_zma-miR171h:pmrd
Length = 124
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 81 tgagccgaaccaatatcactcatgtattcttcattc 116
|||||||||||||||||||||||||| |||||||||
Sbjct: 86 tgagccgaaccaatatcactcatgtactcttcattc 121
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 agacgacatggcgtgatgttgtttcggctcatg 43
||||||||||||||| | |||||||||||||||
Sbjct: 11 agacgacatggcgtggtattgtttcggctcatg 43
>54894_vvi-miR479:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 82 gagccgaaccaatatcactcatgtattcttc 112
|||||||||||||||||||| ||||| ||||
Sbjct: 64 gagccgaaccaatatcactcttgtatgcttc 94
