miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54461_sbi-miR171j:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 gcgagcgatattggtgaggttcaatcagatcatcagatgatgtattttaaatttacatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgagcgatattggtgaggttcaatcagatcatcagatgatgtattttaaatttacatgc 60
Query: 61 atgaaggtgaatccccagggactgattgagccgcgccaatatcacttc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgaaggtgaatccccagggactgattgagccgcgccaatatcacttc 108
>54832_vvi-miR171e:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcactt 107
||||||||||||||||||||||||||
Sbjct: 69 ctgattgagccgcgccaatatcactt 94
>54554_sly-miR171d:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcacttc 108
|||||||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatcacttc 97
>55028_zma-miR171a:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 48 taaatttacatgcatgaaggtgaatccccagggactgattgagccgcgccaatatc 103
||||||| |||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 44 taaatttgcatgcatgaaggtgtgaatccagtgtctgattgagccgcgccaatatc 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 gatattggtgaggttcaatcagat 30
|||||||| |||||||||||||||
Sbjct: 1 gatattggcgaggttcaatcagat 24
>54833_vvi-miR171f:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcactt 94
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatcactt 91
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatcactt 96
>51687_ptc-miR171d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatcactt 95
>51686_ptc-miR171c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcactt 107
||||||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatcactt 99
>48895_osa-miR171a:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gagcgatattggtgaggttcaatc 26
||||||||||||||||||||||||
Sbjct: 6 gagcgatattggtgaggttcaatc 29
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcacttc 108
|||||||||||||||||||||| ||||
Sbjct: 66 ctgattgagccgcgccaatatctcttc 92
>54553_sly-miR171c:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatcac 105
|||||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatcac 100
>54667_stu-miR171:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatca 104
||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatca 22
>54666_stu-miR170:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatca 104
||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatca 22
>54458_sbi-miR171g:pmrd
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 56 ctgattgagccgcgccaatatc 77
>51383_ppt-miR171b:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcac 105
||||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatcac 86
>51382_ppt-miR171a:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatcac 105
||||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatcac 85
>48407_bra-miR171e:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 83 ctgattgagccgcgccaatatc 104
>48369_bna-miR171g:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 77 ctgattgagccgcgccaatatc 98
>48368_bna-miR171f:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 83 ctgattgagccgcgccaatatc 104
>46980_ath-miR171m:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 71 ctgattgagccgcgccaatatc 92
>46977_ath-miR171a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 87 ctgattgagccgcgccaatatc 108
>46975_ath-miR170m:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 71 ctgattgagccgcgccaatatc 92
>46853_ace-miR171c:pmrd
Length = 216
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 195 ctgattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 194 ctgattgagccgcgccaatatc 215
>46850_ace-miR170d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatc 103
||||||||||||||||||||||
Sbjct: 194 ctgattgagccgcgccaatatc 215
>55027_zma-miR170p:pmrd
Length = 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 42 tgattgagccgcgccaatatc 62
>54582_smo-miR171d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 attgagccgcgccaatatcac 105
|||||||||||||||||||||
Sbjct: 71 attgagccgcgccaatatcac 91
>54451_sbi-miR170:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 35 tgattgagccgcgccaatatc 55
>51342_ppd-miR170:pmrd
Length = 297
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 277 tgattgagccgcgccaatatc 297
>48636_gra-miR171:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>48569_gma-miR171m:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 185 tgattgagccgcgccaatatc 205
>48313_bdi-miR171d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 81 tgattgagccgcgccaatatc 101
>48311_bdi-miR171a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 50 tgattgagccgcgccaatatc 70
>46982_ath-miR171o:pmrd
Length = 339
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 319 tgattgagccgcgccaatatc 339
>46981_ath-miR171n:pmrd
Length = 461
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46976_ath-miR170n:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>46851_ace-miR171a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46849_ace-miR170c:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46848_ace-miR170b:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76
>46847_ace-miR170a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgattgagccgcgccaatatc 103
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>55037_zma-miR171j:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
|||||||||||| |||||||||||
Sbjct: 89 ctgattgagccgtgccaatatcac 112
>54910_zel-miR171:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatc 103
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>54453_sbi-miR171b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
|||||||||||| |||||||||||
Sbjct: 92 ctgattgagccgtgccaatatcac 115
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatc 103
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51691_ptc-miR171h:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
|||||||||||| |||||||||||
Sbjct: 70 ctgattgagccgtgccaatatcac 93
>51690_ptc-miR171g:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
|||||||||||| |||||||||||
Sbjct: 70 ctgattgagccgtgccaatatcac 93
>51685_ptc-miR171b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 gatattggtgaggttcaatcagat 30
|||||||||| |||||||||||||
Sbjct: 14 gatattggtgcggttcaatcagat 37
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
|||||||||||| |||||||||||
Sbjct: 94 ctgattgagccgtgccaatatcac 117
>48900_osa-miR171f:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
|||||||||||| |||||||||||
Sbjct: 96 ctgattgagccgtgccaatatcac 119
>48497_ghr-miR171:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 84 gattgagccgcgccaatatc 103
||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatc 85
>46877_aqc-miR171b:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 ctgattgagccgcgccaatatcac 105
|||||||||||| |||||||||||
Sbjct: 54 ctgattgagccgtgccaatatcac 77
