miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54470_sbi-miR393:pmrd
Length = 139
Score = 184 bits (93), Expect = 1e-47
Identities = 113/123 (91%)
Strand = Plus / Plus
Query: 4 atgcctggaggaagcatccaaagggatcgcattgatccgtcactccttccattctatcat 63
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 5 atgcctggaggaagcatccaaagggatcgcattgatccgtcnctccttccattctatcnt 64
Query: 64 gggtggtcgtcgtctacaaggacttcgttcccgacggatcatgcgatccttttggaggct 123
||| || || | ||||| |||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 65 gggnggncgncntctacnaggacttcnttcccgacggatcntgcnatccttttggaggct 124
Query: 124 tcc 126
|||
Sbjct: 125 tcc 127
>48917_osa-miR393:pmrd
Length = 115
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 96 gacggatcatgcgatccttttggaggcttcctct 129
||||||||||||||||||||||||||||||||||
Sbjct: 82 gacggatcatgcgatccttttggaggcttcctct 115
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 ggaagcatccaaagggatcgcattgatcc 41
|||||||||||||||||||||||||||||
Sbjct: 4 ggaagcatccaaagggatcgcattgatcc 32
>55062_zma-miR393f:pmrd
Length = 104
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatccgtcactccttccatt 56
|||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 tccaaagggatcgcattgatccatcattccttccatt 37
>55057_zma-miR393a:pmrd
Length = 104
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatccgtcactccttccatt 56
|||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 tccaaagggatcgcattgatccatcattccttccatt 37
>54850_vvi-miR393b:pmrd
Length = 83
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 ggaggaagcatccaaagggatcgcattgatcc 41
|||||| |||||||||||||||||||||||||
Sbjct: 1 ggaggaggcatccaaagggatcgcattgatcc 32
>48576_gma-miR393:pmrd
Length = 120
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 ggaggaagcatccaaagggatcgcattgatcc 41
|||||| |||||||||||||||||||||||||
Sbjct: 1 ggaggaggcatccaaagggatcgcattgatcc 32
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 8 gaggaggcatccaaagggatcgcattgatcc 38
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcc 35
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcc 35
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcc 35
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcc 35
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 91 gaggaggcatccaaagggatcgcattgatcc 61
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 8 gaggaggcatccaaagggatcgcattgatcc 38
>51721_ptc-miR393b:pmrd
Length = 84
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatcc 32
>51720_ptc-miR393a:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatcc 32
>48730_mtr-miR393:pmrd
Length = 135
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||| |||||||||||||||||||||||||
Sbjct: 12 gaggaggcatccaaagggatcgcattgatcc 42
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||||| |||||||||||||||||||||||
Sbjct: 1 gaggaaggatccaaagggatcgcattgatcc 31
>46998_ath-miR393a:pmrd
Length = 133
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 gaggaagcatccaaagggatcgcattgatcc 41
||||||| |||||||||||||||||||||||
Sbjct: 2 gaggaaggatccaaagggatcgcattgatcc 32
>48731_mtr-miR393b:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 gcatccaaagggatcgcattgatcc 41
|||||||||||||||||||||||||
Sbjct: 3 gcatccaaagggatcgcattgatcc 27
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 atccaaagggatcgcattgatcc 41
|||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcc 33
>46999_ath-miR393b:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 atccaaagggatcgcattgatcc 41
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>54849_vvi-miR393a:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatcc 41
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>48373_bna-miR393:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatcc 41
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48919_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48918_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tccaaagggatcgcattgatc 40
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
