miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004449.1/9137-9221 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 131 bits (66), Expect = 2e-30
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgtccccgggagttctctgcaagcacttcacgaggcactattttgagagcttttgtgaa 70
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gtgtccccgggagttctctacaagcacttcacgatgcactattttgagagcttttgtgaa 60
Query: 71 gtgtttgggggaactcttgatgccac 96
||| ||||||||||||| ||||||||
Sbjct: 61 gtg-ttgggggaactctcgatgccac 85
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 115 bits (58), Expect = 1e-25
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 11 gtgtccccgggagttctctgcaagcacttcacgaggcactattttgagagcttttgtgaa 70
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gtgtccctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaa 60
Query: 71 gtgtttgggggaactctt 88
||||||||||||||||||
Sbjct: 61 gtgtttgggggaactctt 78
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 107 bits (54), Expect = 3e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtgtccccgggagttctctgcaagcacttcacgaggcactattttgagagcttttgtgaa 70
|||||||| |||||||||||||| |||||||| | ||||| |||| ||||||||||||||
Sbjct: 1 gtgtccccaggagttctctgcaaacacttcacaaagcactttttt-agagcttttgtgaa 59
Query: 71 gtgtttgggggaactcttgatgccac 96
||||||||||||||||||| ||||||
Sbjct: 60 gtgtttgggggaactcttggtgccac 85
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 89.7 bits (45), Expect = 7e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 15 ccccgggagttctctgcaagcacttcacgaggcactattttgagagcttttgtgaagtgt 74
|||| ||||||| || |||||||||||||| ||||||||| ||||| | |||||||||||
Sbjct: 5 ccccaggagttcccttcaagcacttcacgacgcactatttagagagttgttgtgaagtgt 64
Query: 75 ttgggggaactct 87
|||||||||||||
Sbjct: 65 ttgggggaactct 77
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 59 agcttttgtgaagtgtttgggggaactcttgatgcca 95
||||||||||||||||||||||||||||||| |||||
Sbjct: 77 agcttttgtgaagtgtttgggggaactcttggtgcca 113
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/68 (88%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 22 agttctctgcaagcacttcacgaggcact---attttgagagctttt-gtgaagtgtttg 77
||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||
Sbjct: 12 agttctctgcaagcacttcacaaggcatcgtcattgtgagagctttttgtgaagtgtttg 71
Query: 78 ggggaact 85
||||||||
Sbjct: 72 ggggaact 79
>RF00451;mir-395;ABXC01004449.1/9310-9395 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 52 ttttgagagcttttgtgaagtgtttgggggaactct 87
|||| |||||||||||||||||| ||||||||||||
Sbjct: 42 ttttaagagcttttgtgaagtgtatgggggaactct 77
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactcttgatg 92
||||||||||||||||||||||||||||
Sbjct: 56 tgtgaagtgtttgggggaactcttgatg 83
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 tttgtgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||||||
Sbjct: 58 tttgtgaagtgtttgggggaactcttg 84
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 21 gagttctctgcaagcacttcacgaggcactattttgagagct--tttgtgaagtgtttgg 78
|||||| || ||| ||||||||| ||||||||||| || || | ||||||||||||||
Sbjct: 11 gagttcccttcaaccacttcacgtggcactattttaggacctactatgtgaagtgtttgg 70
Query: 79 gggaactct 87
|||||||||
Sbjct: 71 gggaactct 79
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 31 caagcacttcacgaggcactattttgagagcttttgtgaagtgtttgggggaactctt 88
||||||||| |||| |||| | ||||||| | | |||||||||||||||||||||||
Sbjct: 21 caagcactttacgacacactgtattgagagttgtcgtgaagtgtttgggggaactctt 78
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 51 attttgaga-gcttttgtgaagtgtttgggggaactct 87
||||||||| ||| ||||||||||||||||||||||||
Sbjct: 66 attttgagaagctattgtgaagtgtttgggggaactct 103
>RF00451;mir-395;ABXC01004559.1/91372-91477 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 ttgtgaagtgtttgggggaactcttgatg 92
|||||||||| ||||||||||||||||||
Sbjct: 74 ttgtgaagtgcttgggggaactcttgatg 102
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||||
Sbjct: 72 tgtgaagtgtttgggggaactcttg 96
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactcttg 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 ccgggagttctctgcaagcacttcacg 43
||||||||||||| |||||||||||||
Sbjct: 7 ccgggagttctcttcaagcacttcacg 33
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttga 90
||||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttga 73
>RF00451;mir-395;AACV01010557.1/49772-49856 39947:Oryza sativa
Japonica Group
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 21 gagttctctgcaagcacttcacgaggcactattttgagagcttttgtgaagtgtttgggg 80
|||||| || ||||||||||||| |||||||||| | || |||||||||||||||||
Sbjct: 11 gagttcccttcaagcacttcacgtggcactatttcaatgcctattgtgaagtgtttgggg 70
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttg 72
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactcttg 79
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 91 tgaagtgtttgggggaactcttg 113
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 86 tgaagtgtttgggggaactcttg 108
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 92 tgaagtgtttgggggaactcttg 114
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 87 tgaagtgtttgggggaactcttg 109
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactcttg 76
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttg 96
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 67 tgaagtgtttgggggaactcttg 89
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttg 84
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 78 tgtgaagtgtttgggggaactct 100
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttg 89
|||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttg 96
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactcttgatgcca 95
|||||||||||||| |||||||||| |||||
Sbjct: 71 tgtgaagtgtttggaggaactcttgttgcca 101
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactct 103
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgaagtgtttgggggaactct 87
||||||||||||||||||||||
Sbjct: 101 gtgaagtgtttgggggaactct 122
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgaagtgtttgggggaactct 87
||||||||||||||||||||||
Sbjct: 89 gtgaagtgtttgggggaactct 110
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgaagtgtttgggggaactct 87
||||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactct 103
>RF00451;mir-395;AACV01019418.1/13768-13856 39947:Oryza sativa
Japonica Group
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 tattttgagagcttttgtgaagtgtttgggggaa 83
||||||||||| | |||||||| |||||||||||
Sbjct: 43 tattttgagagttgttgtgaagcgtttgggggaa 76
