miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54483_sbi-miR395k:pmrd
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaagcttcacattggcagatgtagtcttgagaccaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcccttcaagcacttcacatgaagcttcacattggcagatgtagtcttgagaccaatg 60
Query: 61 tgaagtgtttggaggaactc 80
||||||||||||||||||||
Sbjct: 61 tgaagtgtttggaggaactc 80
>55070_zma-miR395e:pmrd
Length = 257
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaagcttcacattggcagatgtagtcttgagaccaatg 60
||||| ||||| ||||||||||| |||||| |||||| ||| || |||||||||| ||
Sbjct: 106 gttcctttcaaacacttcacatgcagcttctcattggtggatatattcttgagacccgtg 165
Query: 61 tgaagtgtttggaggaactc 80
||||||||||||||||||||
Sbjct: 166 tgaagtgtttggaggaactc 185
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactc 80
|||||||||||||||||||||
Sbjct: 1 gtgaagtgtttggaggaactc 21
>55069_zma-miR395d:pmrd
Length = 81
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaagcttcacattggcagatgtagtcttgagaccaatg 60
||||| ||||| ||||||||||| |||||| |||||| ||| || |||||||||| ||
Sbjct: 3 gttcctttcaaacacttcacatggagcttctcattggtcgatatattcttgagacccgtg 62
Query: 61 tgaagtgtttggaggaact 79
|||||||||||||||||||
Sbjct: 63 tgaagtgtttggaggaact 81
>54482_sbi-miR395j:pmrd
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 74/87 (85%), Gaps = 7/87 (8%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaagct-------tcacattggcagatgtagtcttgag 53
|||||||||||||||||||||||||||| | | |||||| ||||||| |||||
Sbjct: 1 gttcccttcaagcacttcacatgaagctctttgcattatattggcggatgtagcattgag 60
Query: 54 accaatgtgaagtgtttggaggaactc 80
||||||||||||||||||| |||||||
Sbjct: 61 accaatgtgaagtgtttgggggaactc 87
>54480_sbi-miR395h:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatga 24
||||||||||||||||||||||||
Sbjct: 1 gttcccttcaagcacttcacatga 24
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 aatgtgaagtgtttggaggaactc 80
|||||||||||||||| |||||||
Sbjct: 58 aatgtgaagtgtttgggggaactc 81
>48938_osa-miR395q:pmrd
Length = 68
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatga 24
||||||||||||||||||||||||
Sbjct: 3 gttcccttcaagcacttcacatga 26
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 atgtgaagtgtttggaggaactc 80
||||||||||||||| |||||||
Sbjct: 46 atgtgaagtgtttgggggaactc 68
>54484_sbi-miR395l:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
|||||||||||||||||||||||
Sbjct: 1 gttcccttcaagcacttcacatg 23
>55068_zma-miR395c:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tgtgaagtgtttggaggaactc 80
||||||||||||||||||||||
Sbjct: 98 tgtgaagtgtttggaggaactc 119
>48924_osa-miR395c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tgtgaagtgtttggaggaactc 80
||||||||||||||||||||||
Sbjct: 58 tgtgaagtgtttggaggaactc 79
>48932_osa-miR395k:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 caatgtgaagtgtttggaggaactc 80
||||||||||||||||| |||||||
Sbjct: 65 caatgtgaagtgtttgggggaactc 89
>48930_osa-miR395i:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 caatgtgaagtgtttggaggaactc 80
||||||||||||||||| |||||||
Sbjct: 65 caatgtgaagtgtttgggggaactc 89
>48940_osa-miR395s:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcac 32
>48937_osa-miR395p:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 3 gttcccttcaagcacttcac 22
>48936_osa-miR395o:pmrd
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tgaagtgtttggaggaactc 80
||||||||||||||||||||
Sbjct: 50 tgaagtgtttggaggaactc 69
>48935_osa-miR395n:pmrd
Length = 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 3 gttcccttcaagcacttcac 22
>48925_osa-miR395d:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcac 32
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 atgtgaagtgtttggaggaactc 80
||||||||||||||| |||||||
Sbjct: 56 atgtgaagtgtttgggggaactc 78
>55071_zma-miR395f:pmrd
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 ccttcaagcacttcacatg 23
|||||||||||||||||||
Sbjct: 7 ccttcaagcacttcacatg 25
>54478_sbi-miR395f:pmrd
Length = 122
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttca 19
|||||||||||||||||||
Sbjct: 23 gttcccttcaagcacttca 41
>48939_osa-miR395r:pmrd
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 atgtgaagtgtttggaggaactc 80
||||||||||||||| |||||||
Sbjct: 46 atgtgaagtgtttgggggaactc 68
>48927_osa-miR395f:pmrd
Length = 82
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
||||||||||| |||||||||||
Sbjct: 10 gttcccttcaatcacttcacatg 32
