miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54484_sbi-miR395l:pmrd
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatggagcattatttgtcttggagaaagcttaatttgatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcccttcaagcacttcacatggagcattatttgtcttggagaaagcttaatttgatgc 60
Query: 61 attgtgaagtgcttgggggaactc 84
||||||||||||||||||||||||
Sbjct: 61 attgtgaagtgcttgggggaactc 84
>55071_zma-miR395f:pmrd
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 5 ccttcaagcacttcacatggagcattatttgtcttggagaaagcttaatttgatgcattg 64
|||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||
Sbjct: 7 ccttcaagcacttcacatggagcattct--gtcttagagaaagcttaatttattgcattg 64
Query: 65 tgaagtgcttgggggaactc 84
||||||| ||| || |||||
Sbjct: 65 tgaagtgtttgaggaaactc 84
>54483_sbi-miR395k:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
|||||||||||||||||||||||
Sbjct: 1 gttcccttcaagcacttcacatg 23
>54482_sbi-miR395j:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
|||||||||||||||||||||||
Sbjct: 1 gttcccttcaagcacttcacatg 23
>54480_sbi-miR395h:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
|||||||||||||||||||||||
Sbjct: 1 gttcccttcaagcacttcacatg 23
>48938_osa-miR395q:pmrd
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
|||||||||||||||||||||||
Sbjct: 3 gttcccttcaagcacttcacatg 25
>48922_osa-miR395a:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 gtgaagtgcttgggggaactc 84
|||||||||||||||||||||
Sbjct: 112 gtgaagtgcttgggggaactc 132
>48921_osa-miR395a:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 gtgaagtgcttgggggaactc 84
|||||||||||||||||||||
Sbjct: 112 gtgaagtgcttgggggaactc 132
>48940_osa-miR395s:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcac 32
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 attgtgaagtgcttgggggaactc 84
||||||||||| ||||||||||||
Sbjct: 53 attgtgaagtgtttgggggaactc 76
>48937_osa-miR395p:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 3 gttcccttcaagcacttcac 22
>48935_osa-miR395n:pmrd
Length = 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 3 gttcccttcaagcacttcac 22
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 44 ttgtgaagtgtttgggggaactc 66
>48928_osa-miR395g:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 attgtgaagtgcttgggggaactc 84
||||||||||| ||||||||||||
Sbjct: 53 attgtgaagtgtttgggggaactc 76
>48927_osa-miR395f:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgg 24
||||||||||| ||||||||||||
Sbjct: 10 gttcccttcaatcacttcacatgg 33
>48925_osa-miR395d:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcac 20
||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcac 32
>55069_zma-miR395d:pmrd
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatggagc 27
||||| ||||| |||||||||||||||
Sbjct: 3 gttcctttcaaacacttcacatggagc 29
>55067_zma-miR395b:pmrd
Length = 114
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 73 ttgtgaagtgtttgggggaactc 95
>54479_sbi-miR395g:pmrd
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 46 ttgtgaagtgtttgggggaactc 68
>54478_sbi-miR395f:pmrd
Length = 122
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttca 19
|||||||||||||||||||
Sbjct: 23 gttcccttcaagcacttca 41
>54477_sbi-miR395e:pmrd
Length = 105
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 64 ttgtgaagtgtttgggggaactc 86
>54476_sbi-miR395d:pmrd
Length = 104
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 63 ttgtgaagtgtttgggggaactc 85
>54475_sbi-miR395c:pmrd
Length = 208
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 19 ttgtgaagtgtttgggggaactc 41
>54474_sbi-miR395b:pmrd
Length = 105
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 64 ttgtgaagtgtttgggggaactc 86
>48933_osa-miR395l:pmrd
Length = 94
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgcttgggggaactc 84
|||||||||| ||||||||||||
Sbjct: 72 ttgtgaagtgtttgggggaactc 94
