miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54487_sbi-miR396c:pmrd
Length = 162
Score = 89.7 bits (45), Expect = 6e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 118 caaagaaggtcaagaaagctgtgggaagaaatgacataacaagga 162
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 caaagaaggtcaagaaagctgtgggaagaaatgacataacaagga 162
Score = 79.8 bits (40), Expect = 6e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 1 ttcaagtccatgccatgcctttccacagctttcttgaact 40
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcaagtccatgccatgcctttccacagctttcttgaact 40
>48947_osa-miR396c:pmrd
Length = 141
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 tgccatgcctttccacagctttcttgaact 40
||||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaact 30
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 120 aagaaggtcaagaaagctgtgggaagaaatg 150
|||| ||||||||||||||||||||||||||
Sbjct: 108 aagagggtcaagaaagctgtgggaagaaatg 138
>54869_vvi-miR396b:pmrd
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 tgccatgcctttccacagctttcttgaact 40
|||||||| |||||||||||||||||||||
Sbjct: 4 tgccatgcttttccacagctttcttgaact 33
>55078_zma-miR396g:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 122 gaaggtcaagaaagctgtgggaag 145
||||||||||||||||||||||||
Sbjct: 94 gaaggtcaagaaagctgtgggaag 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 1 ctttccacagctttcttgaact 22
>54868_vvi-miR396a:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaact 33
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaact 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 118 caaagaaggtcaagaaagctgtgg 141
|||||||| |||||||||||||||
Sbjct: 109 caaagaagttcaagaaagctgtgg 132
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaact 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 118 caaagaaggtcaagaaagctgtgg 141
|||||||| |||||||||||||||
Sbjct: 109 caaagaagttcaagaaagctgtgg 132
>51738_ptc-miR396e:pmrd
Length = 145
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 118 caaagaaggtcaagaaagctgtgg 141
|||||||| |||||||||||||||
Sbjct: 36 caaagaagttcaagaaagctgtgg 13
>51737_ptc-miR396d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>48579_gma-miR396b:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcctttccacagctttcttgaact 40
||||| |||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaact 40
>55077_zma-miR396f:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 1 ctttccacagctttcttgaact 22
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 120 aagaaggtcaagaaagctgtgggaag 145
||||||||||||||||| ||||||||
Sbjct: 141 aagaaggtcaagaaagccgtgggaag 166
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 atgcctttccacagctttcttgaact 40
|||| |||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaact 123
>51736_ptc-miR396c:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 tgccatgcctttccacagctttcttgaact 40
||||||| |||||||||||||||||||||
Sbjct: 1 tgccatgtttttccacagctttcttgaact 30
>48580_gma-miR396c:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 atgcctttccacagctttcttgaact 40
|||| |||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaact 40
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 94 tttccacagctttcttgaact 74
>51564_pta-miR396:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 16 tttccacagctttcttgaact 36
>48748_mtr-miR396a:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 5 tttccacagctttcttgaact 25
>47009_ath-miR396b:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaact 30
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 122 gaaggtcaagaaagctgtgggaagaaatgaca 153
|||| |||||||||||||||||| | ||||||
Sbjct: 104 gaagctcaagaaagctgtgggaaaacatgaca 135
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
