miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45860_miR408:micropc
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
Query: 61 ccactcatgcactgcctcttccctggc 87
|||||||||||||||||||||||||||
Sbjct: 61 ccactcatgcactgcctcttccctggc 87
>45398_miR408:micropc
Length = 89
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 61
Query: 61 ccactcatgcactgcctcttccctggc 87
|||||||||||||||||||||||||||
Sbjct: 62 ccactcatgcactgcctcttccctggc 88
>46728_miR408:micropc
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 1 gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
|||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 1 gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 60
Query: 61 ccactcatgcactgcctcttccctggc 87
| |||||||||||||||||||||||||
Sbjct: 61 ctactcatgcactgcctcttccctggc 87
>46159_miR408:micropc
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 1 gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
|||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 1 gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 60
Query: 61 ccactcatgcactgcctcttccctggc 87
| |||||||||||||||||||||||||
Sbjct: 61 ctactcatgcactgcctcttccctggc 87
>45531_miR408:micropc
Length = 89
Score = 117 bits (59), Expect = 1e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 1 gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
|||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 2 gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 61
Query: 61 ccactcatgcactgcctcttccctggc 87
| |||||||||||||||||||||||||
Sbjct: 62 ctactcatgcactgcctcttccctggc 88
>45949_miR408:micropc
Length = 99
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| |||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
>45551_miR408:micropc
Length = 99
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| |||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
>46359_miR408:micropc
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 47 ctgttttggcttcactcatgcactgcctcttccctggc 84
>46309_miR408:micropc
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
>46155_miR408:micropc
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
>45394_miR408:micropc
Length = 112
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| | ||||||||||||||||||||||||
Sbjct: 74 ctgttgtggctacgctcatgcactgcctcttccctggc 111
>44968_miR408:micropc
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| | ||||||||||||||||||||||||
Sbjct: 73 ctgttgtggctacgctcatgcactgcctcttccctggc 110
>44861_miR408:micropc
Length = 121
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| | ||||||||||||||||||||||||
Sbjct: 83 ctgttgtggctacgctcatgcactgcctcttccctggc 120
>44821_miR408:micropc
Length = 119
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| | ||||||||||||||||||||||||
Sbjct: 82 ctgttgtggctacgctcatgcactgcctcttccctggc 119
>46505_miR408:micropc
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
|||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83
>46401_miR408:micropc
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
|||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83
>46052_miR408:micropc
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
|||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83
>45814_miR408:micropc
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
|||| |||||| || ||||||||||||||||||||||
Sbjct: 48 tgttttggctctacccatgcactgcctcttccctggc 84
>45726_miR408:micropc
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
|||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83
>45593_miR408:micropc
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
|||| |||||| || ||||||||||||||||||||||
Sbjct: 48 tgttttggctctacccatgcactgcctcttccctggc 84
