miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 75.8 bits (38), Expect = 8e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggc 104
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| |||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||||||||| | ||||||||||||||||||||||||
Sbjct: 101 ctgttgtggctacgctcatgcactgcctcttccctggc 138
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/85 (83%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 5 gggacgaggtagagcatggatggagttcccaacagaaca--gtcaagctgttgtggctcc 62
|||||||||||| ||||||||||| | ||||||| | || |||||||| | ||||
Sbjct: 23 gggacgaggtagtgcatggatggaactattaacagaagaatgttaagctgtttttgctct 82
Query: 63 actcatgcactgcctcttccctggc 87
|| ||||||||||||||||||||||
Sbjct: 83 acccatgcactgcctcttccctggc 107
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
|||| |||||| || ||||||||||||||||||||||
Sbjct: 64 tgttttggctctacccatgcactgcctcttccctggc 100
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 catgcactgcctcttccctggc 87
||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
||||| |||||| || | ||||||||||||||||||||
Sbjct: 64 ctgttttggctctacccctgcactgcctcttccctggc 101
