miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 74
Query: 61 atcctgagtttc 72
||||||||||||
Sbjct: 75 atcctgagtttc 86
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/77 (84%), Gaps = 5/77 (6%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttg-----aatcttgatcttcatttgcgc 55
||||||||||||||||||||||||| | |||| | ||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatggatgatcttctcttcactcttgatcttctcttgcgc 74
Query: 56 tatccatcctgagtttc 72
|||||||||||||||||
Sbjct: 75 tatccatcctgagtttc 91
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggc 26
||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggc 40
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 39 ttgatcttcatttgcgctatccatcctgagtttc 72
||||||||| |||||||||||||||||||||||
Sbjct: 72 ttgatcttctcttgcgctatccatcctgagtttc 105
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 105 gcgctatccatcctgagtttc 125
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttc 86
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 ttgcgctatccatcctgagtttc 72
|||||||||||||||||||||||
Sbjct: 90 ttgcgctatccatcctgagtttc 112
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcca 22
||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcca 36
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttc 111
>RF00689;MIR390;AAAA02011305.1/16847-16930 39946:Oryza sativa
Indica Group
Length = 84
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>RF00689;MIR390;ABEU01005892.1/15773-15902 145481:Physcomitrella
patens subsp. patens
Length = 130
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 116 aagctcaggagggatagcgcc 96
