miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48540_gma-miR159b:pmrd
Length = 186
Score = 79.8 bits (40), Expect = 8e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 124 aagggtttgcatgaactgggagacgaggctaccttgatctttttggtattggagtgaagg 183
||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct: 110 aagggtttgcatgccctgggagatgagtttaccttgatctttt-ggtattggagtgaagg 168
Query: 184 gagctcca 191
||||||||
Sbjct: 169 gagctcca 176
>51607_ptc-miR159f:pmrd
Length = 201
Score = 69.9 bits (35), Expect = 7e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 115 gcgcagtctaagggtttgcatgaactgggagacgaggctaccttgatctttttggtattg 174
|||||| |||||||| ||||||| || ||||||| || |||| ||| | |||| ||||||
Sbjct: 117 gcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattg 176
Query: 175 gagtgaagggagctc 189
|||||||||||||||
Sbjct: 177 gagtgaagggagctc 191
Score = 50.1 bits (25), Expect = 7e-07
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 19 aatggagctctctgaactccaagtctggaaggaggt-gatggtaggccacggctgctagt 77
|||||||||||| |||||| | ||| |||||| | |||||||| ||| ||||||||||
Sbjct: 8 aatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggctgctagt 67
Query: 78 ccatgaacacccgtggttgcgcaga 102
|||||| |||| ||| ||||||||
Sbjct: 68 tcatgaatacccttgggtgcgcaga 92
>48541_gma-miR159c:pmrd
Length = 185
Score = 65.9 bits (33), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 126 gggtttgcatgaactgggagacgaggctaccttgatctttttggtattggagtgaaggga 185
|||| |||||||| | | ||||| ||||||||||||||||| | ||||||||||||||||
Sbjct: 110 gggtctgcatgaatttgaagacggggctaccttgatcttttag-tattggagtgaaggga 168
Query: 186 gctcc 190
|||||
Sbjct: 169 gctcc 173
>51606_ptc-miR159e:pmrd
Length = 192
Score = 63.9 bits (32), Expect = 5e-11
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 115 gcgcagtctaagggtttgcatgaactgggagacgaggctaccttgatctttttggtattg 174
|||||| |||||||| |||||| || ||||| | || | |||||||||||||||| |||
Sbjct: 107 gcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtcttg 166
Query: 175 gagtgaagggagctcc 190
| ||||||||||||||
Sbjct: 167 gggtgaagggagctcc 182
>54775_vvi-miR159a:pmrd
Length = 194
Score = 48.1 bits (24), Expect = 3e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 126 gggtttgcatgaactgggagacgaggctaccttgatctttttggtattggagtgaaggga 185
|||| ||||||| || ||||| | || | ||||||||||| ||| ||||||||||||||
Sbjct: 119 gggtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaaggga 178
Query: 186 gctc 189
||||
Sbjct: 179 gctc 182
>54688_tae-miR319c:pmrd
Length = 253
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 attggagtgaagggagctccat 192
||||||||||||||||||||||
Sbjct: 1 attggagtgaagggagctccat 22
>54687_tae-miR319b:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 ttggagtgaagggagctcca 191
||||||||||||||||||||
Sbjct: 165 ttggagtgaagggagctcca 184
>54644_sof-miR319c:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 ttggagtgaagggagctcca 191
||||||||||||||||||||
Sbjct: 165 ttggagtgaagggagctcca 184
