miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02000051.1/79825-80023 3988:Ricinus communis
(castor bean)
Length = 199
Score = 97.6 bits (49), Expect = 6e-20
Identities = 125/149 (83%), Gaps = 6/149 (4%)
Strand = Plus / Plus
Query: 47 aaggaggtgatggtaggccacggctgctagtccatgaacacccgtggttgcgcagactca 106
||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||| | |
Sbjct: 37 aaggaggtgatggtaggccacggctgctagttcatgaatacccctggctgcgcaggatta 96
Query: 107 a-----tactgtg-gcgcagtctaagggtttgcatgaactgggagacgaggctaccttga 160
| || || |||||| |||||||||||||||| |||||||||| || ||||||
Sbjct: 97 aagtaataaagtttgcgcaggctaagggtttgcatgacctgggagacgtggttaccttct 156
Query: 161 tctttttggtattggagtgaagggagctc 189
||||||| ||||||||||||||||||||
Sbjct: 157 tcttttttatattggagtgaagggagctc 185
>RF00638;MIR159;ABIM01022236.1/33140-32940 3649:Carica papaya
(papaya)
Length = 201
Score = 77.8 bits (39), Expect = 6e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 115 gcgcagtctaagggtttgcatgaactgggagacgaggctaccttgatctttttggtattg 174
|||||| |||||||||||||||| | |||||| || | | ||||||||||||||||||
Sbjct: 113 gcgcaggctaagggtttgcatgagccaggagacatggttcctttgatctttttggtattg 172
Query: 175 gagtgaagggagctc 189
|||||||||||||||
Sbjct: 173 gagtgaagggagctc 187
>RF00638;MIR159;AARH01006065.1/463210-463415 3694:Populus
trichocarpa
Length = 206
Score = 69.9 bits (35), Expect = 1e-11
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 115 gcgcagtctaagggtttgcatgaactgggagacgaggctaccttgatctttttggtattg 174
|||||| |||||||| ||||||| || ||||||| || |||| ||| | |||| ||||||
Sbjct: 118 gcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattg 177
Query: 175 gagtgaagggagctc 189
|||||||||||||||
Sbjct: 178 gagtgaagggagctc 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 19 aatggagctctctgaactccaagtctggaaggaggt-gatggtaggccacggctgctagt 77
|||||||||||| |||||| | ||| |||||| | |||||||| ||| ||||||||||
Sbjct: 9 aatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggctgctagt 68
Query: 78 ccatgaacacccgtggttgcgcaga 102
|||||| |||| ||| ||||||||
Sbjct: 69 tcatgaatacccttgggtgcgcaga 93
>RF00638;MIR159;CAAP02000074.1/110075-110270 29760:Vitis vinifera
Length = 196
Score = 67.9 bits (34), Expect = 5e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 140 tgggagacgaggctaccttgatctttttggtattggagtgaagggagctc 189
||||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 133 tgggagatgagggtactttgatctttctggtattggagtgaagggagctc 182
>RF00638;MIR159;AARH01006065.1/468133-468327 3694:Populus
trichocarpa
Length = 195
Score = 63.9 bits (32), Expect = 8e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 115 gcgcagtctaagggtttgcatgaactgggagacgaggctaccttgatctttttggtattg 174
|||||| |||||||| |||||| || ||||| | || | |||||||||||||||| |||
Sbjct: 107 gcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtcttg 166
Query: 175 gagtgaagggagctcc 190
| ||||||||||||||
Sbjct: 167 gggtgaagggagctcc 182
>RF00638;MIR159;EF592198.1/121-4 29780:Mangifera indica (mango)
Length = 118
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 115 gcgcagtctaagggtttgcatgaactgggagacgag 150
||||||||| ||||||||||||| ||||||||||||
Sbjct: 65 gcgcagtcttagggtttgcatgacctgggagacgag 100
>RF00638;MIR159;AM454957.2/557-754 29760:Vitis vinifera
Length = 198
Score = 48.1 bits (24), Expect = 5e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 126 gggtttgcatgaactgggagacgaggctaccttgatctttttggtattggagtgaaggga 185
|||| ||||||| || ||||| | || | ||||||||||| ||| ||||||||||||||
Sbjct: 121 gggtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaaggga 180
Query: 186 gctc 189
||||
Sbjct: 181 gctc 184
>RF00638;MIR159;AASG02000051.1/89024-89224 3988:Ricinus communis
(castor bean)
Length = 201
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 123 taagggtttgcatgaactgggagacg 148
||||||||||||||| ||||||||||
Sbjct: 121 taagggtttgcatgacctgggagacg 146
