miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 95.6 bits (48), Expect = 7e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 gatgttggaacggctcaatcaaatcaaatctccc-aagaattgggtcctttagtttgatt 59
|||||||||| ||||||||||||||||||||||| ||| |||||||||||| | |||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaaagttttgggtcctttaatctgatt 70
Query: 60 gagccgtgccaatatc 75
||||||||||||||||
Sbjct: 71 gagccgtgccaatatc 86
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/77 (90%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 gatgttggaacggctcaatcaaatcaaatctcccaa--gaattgggtcctttagtttgat 58
|||||||||| ||||||||||||||||||||||||| | |||||||||||| | ||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgat 70
Query: 59 tgagccgtgccaatatc 75
|||||||||||||||||
Sbjct: 71 tgagccgtgccaatatc 87
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/82 (84%), Gaps = 7/82 (8%)
Strand = Plus / Plus
Query: 1 gatgttggaacggctcaatcaaatcaaatctcccaag-------aattgggtcctttagt 53
|||||||||| |||||||||||||||||||||| ||| ||||||| |||| |
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctccaaagtctttgattttgggtcttttaat 70
Query: 54 ttgattgagccgtgccaatatc 75
||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1 gatgttggaacggctcaatcaaatcaaatctcccaagaattgggtcctttagtttgattg 60
|||||||| |||||||||||||| |||| || ||| ||| |||||||| | ||||||
Sbjct: 11 gatgttgggacggctcaatcaaaccaaagatctcaatggttgagtcctttaatctgattg 70
Query: 61 agccgtgccaatatc 75
|||||||||||||||
Sbjct: 71 agccgtgccaatatc 85
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 ctttagtttgattgagccgtgccaatatc 75
||||||| |||||||||||||||||||||
Sbjct: 62 ctttagtctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 tttagtttgattgagccgtgccaatatc 75
|||||| |||||||||||||||||||||
Sbjct: 76 tttagtctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 40 ttgggtcctttagtttgattgagccgtgccaatatc 75
||||||| |||| | |||||||||||||||||||||
Sbjct: 48 ttgggtcttttaatctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 57 gtttgattgagccgtgccaatatc 80
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 82 gtttgattgagccgtgccaatatc 105
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 109 gtttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 79 gtttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 63 gtttgattgagccgtgccaatatc 86
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 gtttgattgagccgtgccaatatc 75
||||||||||||||||||||||||
Sbjct: 109 gtttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 88 tttgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 13 gctcaatcaaatcaaatctcccaagaattgggtcctttagtttgattgagccgtgccaat 72
|||||||||||||||| | | ||| |||||| |||| | ||||||||||||||||||
Sbjct: 14 gctcaatcaaatcaaagcactcaatggttgggttctttcatctgattgagccgtgccaat 73
Query: 73 atc 75
|||
Sbjct: 74 atc 76
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatatc 113
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatc 106
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatatc 75
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tttgattgagccgtgccaatat 74
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 ttgattgagccgtgccaatatc 75
||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 ttgattgagccgtgccaatatc 75
||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatc 123
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatc 121
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 83 tgattgagccgtgccaatatc 103
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatc 117
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 104 tgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgattgagccgtgccaatatc 75
|||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatc 109
