miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
||||||||||||||||||||||||||
Sbjct: 82 gtgttgtcggaccaggcttcattccc 107
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
||||||||||||||||||||||||||
Sbjct: 117 gtgttgtcggaccaggcttcattccc 142
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
||||||||||||||||||||||||||
Sbjct: 156 gtgttgtcggaccaggcttcattccc 181
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 117 gttgtcggaccaggcttcattccc 140
||||||||||||||||||||||||
Sbjct: 105 gttgtcggaccaggcttcattccc 128
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
|||| |||||||||||||||||||||
Sbjct: 105 gtgtcgtcggaccaggcttcattccc 130
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 119 tgtcggaccaggcttcattccc 140
||||||||||||||||||||||
Sbjct: 71 tgtcggaccaggcttcattccc 92
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
|||| |||||||||||||||||||||
Sbjct: 91 gtgtcgtcggaccaggcttcattccc 116
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 119 tgtcggaccaggcttcattccc 140
||||||||||||||||||||||
Sbjct: 74 tgtcggaccaggcttcattccc 95
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 119 tgtcggaccaggcttcattccc 140
||||||||||||||||||||||
Sbjct: 128 tgtcggaccaggcttcattccc 149
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
|||| |||||||||||||||||||||
Sbjct: 102 gtgtcgtcggaccaggcttcattccc 127
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
|||| |||||||||||||||||||||
Sbjct: 125 gtgtcgtcggaccaggcttcattccc 150
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gtgttgtcggaccaggcttcattccc 140
|||| |||||||||||||||||||||
Sbjct: 119 gtgtcgtcggaccaggcttcattccc 144
