miRNEST 2.0, an integrative microRNA resource :: BLAST
>48493_ghr-miR162a:pmrd
Length = 148
Score = 127 bits (64), Expect = 1e-30
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
||||||||||||||||||||||||||||||| || |||||||||||| | || ||||||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctg-agaattttgttgtgagaataacacaaat 82
Query: 61 acatgaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||||||
Sbjct: 83 acatgaatcgatcgataaacctctgcatccag 114
>54387_rco-miR162:pmrd
Length = 96
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagca-caaa 59
||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataaaa 62
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
| |||||||||||||||||||||||||||||||
Sbjct: 63 cgcatgaatcgatcgataaacctctgcatccag 95
>48423_cpa-miR162a:pmrd
Length = 109
Score = 89.7 bits (45), Expect = 3e-19
Identities = 83/92 (90%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
||||||||||||||||||||||||||||||| ||| |||| ||||||| | |||| |
Sbjct: 13 ctggaggcagcggttcatcgatctcttcctg--ggaatttggtgtgaaa-aatcacaga- 68
Query: 61 acatgaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||||||
Sbjct: 69 acatgaatcgatcgataaacctctgcatccag 100
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 3e-16
Identities = 82/93 (88%), Gaps = 6/93 (6%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-aaa 59
|||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacgaaa 41
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
||||||| ||||||||||||||||||||||||
Sbjct: 40 aacatgaaccgatcgataaacctctgcatccag 8
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 3e-16
Identities = 82/93 (88%), Gaps = 6/93 (6%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-aaa 59
|||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacgaaa 41
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
||||||| ||||||||||||||||||||||||
Sbjct: 40 aacatgaaccgatcgataaacctctgcatccag 8
>51616_ptc-miR162a:pmrd
Length = 107
Score = 79.8 bits (40), Expect = 3e-16
Identities = 82/93 (88%), Gaps = 6/93 (6%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-aaa 59
|||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||
Sbjct: 11 ctggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacgaaa 65
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
||||||| ||||||||||||||||||||||||
Sbjct: 66 aacatgaaccgatcgataaacctctgcatccag 98
>48682_llu-miR162:pmrd
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 49 attagcacaaacacatgaatcgatcgataaacctctgcatccag 92
|||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 38 attaacacaaac-catgaatcgatcgataaacctctgcatccag 80
>48545_gma-miR162a:pmrd
Length = 102
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatccag 92
|||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccag 93
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||||||||||
Sbjct: 10 ctggatgcagcggttcatcgatctcttcctg 40
>46937_ath-miR162a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatccag 92
||||||| |||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccag 109
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
|||||||||||||||||||||||| ||||| || |||||| |||| || ||| |||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 40
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
||| ||| ||||||||||||||||||||||||
Sbjct: 39 aacacgaaccgatcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 4e-09
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
|||||||||||||||||||||||| ||||| || |||||| |||| || ||| |||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 42
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
||| ||| ||||||||||||||||||||||||
Sbjct: 41 aacacgaaccgatcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 4e-09
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
|||||||||||||||||||||||| ||||| || |||||| |||| || ||| |||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 42
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
||| ||| ||||||||||||||||||||||||
Sbjct: 41 aacacgaaccgatcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
|||||||||||||||||||||||| ||||| || |||||| |||| || ||| |||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 40
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
||| ||| ||||||||||||||||||||||||
Sbjct: 39 aacacgaaccgatcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
|||||||||||||||||||||||| ||||| || |||||| |||| || ||| |||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 65
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
||| ||| ||||||||||||||||||||||||
Sbjct: 66 aacacgaaccgatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
|||||||||||||||||||||||| ||||| || |||||| |||| || ||| |||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 65
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
||| ||| ||||||||||||||||||||||||
Sbjct: 66 aacacgaaccgatcgataaacctctgcatccag 98
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatccag 92
|||||||||| |||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 65 gaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccag 15
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 102 ctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccag 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34
>54784_vvi-miR162:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||||||||||
Sbjct: 9 ctggatgcagcggttcatcgatctcttcctg 39
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tggaggcagcggttcatcgatctcttcctg 31
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48690_mdo-miR162:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatccag 92
||||||||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatct 24
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tcgataaacctctgcatccag 92
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tcgataaacctctgcatccag 92
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
