miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 113 bits (57), Expect = 4e-25
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagca-caaa 59
||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataaaa 62
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
| |||||||||||||||||||||||||||||||
Sbjct: 63 cgcatgaatcgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 83/92 (90%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
||||||||||||||||||||||||||||||| ||| |||| ||||||| | |||| |
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg--ggaatttggtgtgaaa-aatcacaga- 58
Query: 61 acatgaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||||||
Sbjct: 59 acatgaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 79.8 bits (40), Expect = 6e-15
Identities = 82/93 (88%), Gaps = 6/93 (6%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-aaa 59
|||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacgaaa 57
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
||||||| ||||||||||||||||||||||||
Sbjct: 58 aacatgaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatccag 92
||||||| |||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccag 87
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
|||||||||||||||||||||||| ||||| || |||||| |||| || ||| |||
Sbjct: 3 ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 57
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
||| ||| ||||||||||||||||||||||||
Sbjct: 58 aacacgaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatccag 92
|||||||||| |||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccag 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||| ||||||
Sbjct: 3 ctggatgcagcggttcatcgatctgttcctg 33
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||||||||||
Sbjct: 3 ctggatgcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
|||||| |||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccag 132
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatccag 92
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctctt 27
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
