miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 aggaaagatcagatcatgtggcagc 65
|||||||||||||||||||||||||
Sbjct: 64 aggaaagatcagatcatgtggcagc 88
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 aggaaagatcagatcatgtggcagc 65
|||||||||||||||||||||||||
Sbjct: 57 aggaaagatcagatcatgtggcagc 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcgtgatctcaacttttct 30
||||||||||||| |||||| |||||||||
Sbjct: 14 tgaagctgccagcatgatctaaacttttct 43
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 ggaaagatcagatcatgtggcagcttca 69
||||||||||||||||||||||| ||||
Sbjct: 53 ggaaagatcagatcatgtggcagtttca 80
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcgtgatctcaactt 26
||||||||||||| ||||||||||||
Sbjct: 14 tgaagctgccagcatgatctcaactt 39
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 aaggaaagatcagatcatgtgg 61
||||||||||||||||||||||
Sbjct: 53 aaggaaagatcagatcatgtgg 74
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 aggaaagatcagatcatgtggcagcttca 69
|||| ||||||||||||||||||| ||||
Sbjct: 53 aggagagatcagatcatgtggcagtttca 81
