miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48693_mes-miR172:pmrd
Length = 146
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 tgcgtcaccatcaagattcacaaaactatgaaggcttcatcgggacggtgagtgtacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tgcgtcaccatcaagattcacaaaactatgaaggcttcatcgggacggtgagtgtacggc 69
Query: 61 cggcggcggtggctcttcttacttaaaaggtttcctttttcgtatgagaatcttgatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cggcggcggtggctcttcttacttaaaaggtttcctttttcgtatgagaatcttgatgat 129
Query: 121 gctgca 126
||||||
Sbjct: 130 gctgca 135
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 102 gtatgagaatcttgatgatgctgca 126
|||||||||||||||||||||||||
Sbjct: 93 gtatgagaatcttgatgatgctgca 117
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 102 gtatgagaatcttgatgatgctgca 126
|||||||||||||||||||||||||
Sbjct: 41 gtatgagaatcttgatgatgctgca 17
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 102 gtatgagaatcttgatgatgctgca 126
|||||||||||||||||||||||||
Sbjct: 92 gtatgagaatcttgatgatgctgca 116
>46986_ath-miR172c:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 102 gtatgagaatcttgatgatgctgca 126
|||||||||||||||||||||||||
Sbjct: 93 gtatgagaatcttgatgatgctgca 117
>48410_bra-miR172b:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 78 tatgagaatcttgatgatgctgca 101
>48409_bra-miR172b:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 78 tatgagaatcttgatgatgctgca 101
>48408_bra-miR172a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 83 tatgagaatcttgatgatgctgca 106
>48388_bol-miR172b:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 78 tatgagaatcttgatgatgctgca 101
>48387_bol-miR172a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 83 tatgagaatcttgatgatgctgca 106
>47664_ath-miRf10564-akr:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 71 tatgagaatcttgatgatgctgca 94
>46985_ath-miR172b:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 67 tatgagaatcttgatgatgctgca 90
>46984_ath-miR172b:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 67 tatgagaatcttgatgatgctgca 90
>46882_aqc-miR172a:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
||||||||||||||||||||||||
Sbjct: 94 tatgagaatcttgatgatgctgca 117
>55043_zma-miR172d:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 51 atgagaatcttgatgatgctgca 73
>55042_zma-miR172c:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 100 atgagaatcttgatgatgctgca 122
>55041_zma-miR172b:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 103 atgagaatcttgatgatgctgca 125
>55040_zma-miR172a:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 60 atgagaatcttgatgatgctgca 82
>54840_vvi-miR172d:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 76 atgagaatcttgatgatgctgca 98
>54837_vvi-miR172a:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 32 atgagaatcttgatgatgctgca 10
>54668_stu-miR172:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 70 atgagaatcttgatgatgctgca 92
>54466_sbi-miR172d:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 70 atgagaatcttgatgatgctgca 92
>54465_sbi-miR172c:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 96 atgagaatcttgatgatgctgca 118
>54463_sbi-miR172a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 79 atgagaatcttgatgatgctgca 101
>49516_osa-miRf10301-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 84 atgagaatcttgatgatgctgca 106
>48909_osa-miR172d:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 88 atgagaatcttgatgatgctgca 110
>48133_ath-miRf11033-akr:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 84 atgagaatcttgatgatgctgca 106
>47531_ath-miRf10431-akr:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 88 atgagaatcttgatgatgctgca 110
>46987_ath-miR172d:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 96 tttttcgtatgagaatcttgatgatgctgca 126
||||| || ||||||||||||||||||||||
Sbjct: 77 tttttggtttgagaatcttgatgatgctgca 107
>46983_ath-miR172a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 atgagaatcttgatgatgctgca 126
|||||||||||||||||||||||
Sbjct: 75 atgagaatcttgatgatgctgca 97
>54838_vvi-miR172b:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 31 tgagaatcttgatgatgctgca 10
>54556_sly-miR172b:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 113 tgagaatcttgatgatgctgca 134
>52946_ptc-miRf11124-akr:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 102 tgagaatcttgatgatgctgca 123
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 105 tgagaatcttgatgatgctgca 126
>51947_ptc-miRf10125-akr:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 101 tgagaatcttgatgatgctgca 122
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 112 tgagaatcttgatgatgctgca 133
>51703_ptc-miR172f:pmrd
Length = 161
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 130 tgagaatcttgatgatgctgca 151
>51700_ptc-miR172c:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgca 118
>51699_ptc-miR172b:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 109 tgagaatcttgatgatgctgca 130
>51698_ptc-miR172a:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 98 tgagaatcttgatgatgctgca 119
>51344_ppd-miR172b:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 31 tgagaatcttgatgatgctgca 10
>51343_ppd-miR172a:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgca 128
>48906_osa-miR172a:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgca 98
>48571_gma-miR172b:pmrd
Length = 153
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 112 tgagaatcttgatgatgctgca 133
>48570_gma-miR172a:pmrd
Length = 159
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgagaatcttgatgatgctgca 126
||||||||||||||||||||||
Sbjct: 118 tgagaatcttgatgatgctgca 139
>54555_sly-miR172a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 106 gagaatcttgatgatgctgca 126
|||||||||||||||||||||
Sbjct: 85 gagaatcttgatgatgctgca 105
>51701_ptc-miR172d:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 103 tatgagaatcttgatgatgctgca 126
|||| |||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgca 172
>48637_gra-miR172a:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 agaatcttgatgatgctgca 126
||||||||||||||||||||
Sbjct: 1 agaatcttgatgatgctgca 20
