miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 agctcccgccttgcatcaactga 96
|||||||||||||||||||||||
Sbjct: 85 agctcccgccttgcatcaactga 107
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gctcccgccttgcatcaactga 96
||||||||||||||||||||||
Sbjct: 96 gctcccgccttgcatcaactga 117
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactg 24
||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaact 23
|||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaact 23
|||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gctcccgccttgcatcaactga 96
||||||||||||||||||||||
Sbjct: 94 gctcccgccttgcatcaactga 115
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana
(thale cress)
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgccgccg 30
||||||||||||| |||||| |||||||||
Sbjct: 19 tcgcttggtgcagatcgggacctgccgccg 48
