miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48018_ath-miRf10918-akr:pmrd
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 3 cgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgtt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgtt 60
Query: 63 gtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaag 120
Query: 123 tgttaacg 130
||||||||
Sbjct: 121 tgttaacg 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaacg 130
||||||||||| ||| ||||||| ||||||||
Sbjct: 32 gctgttaggagcgctattaagaaatgttaacg 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 3 cgttaacatttcttaatagcgctcctaacagc 34
|||||||| ||||||| ||| |||||||||||
Sbjct: 128 cgttaacacttcttaacagctctcctaacagc 97
>47478_ath-miRf10378-akr:pmrd
Length = 132
Score = 254 bits (128), Expect = 1e-68
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 1 accgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgttaacacttcttaatagcgctcctaacagccattacaaaacatggcctaacagccg 60
Query: 61 ttgtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaaga 120
Query: 121 agtgttaacggt 132
||||||||||||
Sbjct: 121 agtgttaacggt 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaacggt 132
||||||||||| ||| ||||||||||||||||||
Sbjct: 34 gctgttaggagcgctattaagaagtgttaacggt 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1 accgttaacatttcttaatagcgctcctaacagc 34
|||||||||| ||||||| ||| |||||||||||
Sbjct: 132 accgttaacacttcttaacagctctcctaacagc 99
>48091_ath-miRf10991-akr:pmrd
Length = 128
Score = 246 bits (124), Expect = 3e-66
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 3 cgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgtt 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgttaacacttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgtt 60
Query: 63 gtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaag 120
Query: 123 tgttaacg 130
||||||||
Sbjct: 121 tgttaacg 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaacg 130
||||||||||| ||| ||||||||||||||||
Sbjct: 32 gctgttaggagcgctattaagaagtgttaacg 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 3 cgttaacatttcttaatagcgctcctaacagc 34
|||||||| ||||||| ||| |||||||||||
Sbjct: 128 cgttaacacttcttaacagctctcctaacagc 97
>47154_ath-miRf10054-akr:pmrd
Length = 126
Score = 202 bits (102), Expect = 5e-53
Identities = 120/126 (95%)
Strand = Plus / Plus
Query: 4 gttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgttg 63
||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gttaacactccttaacagcgctcctaacagcccttacaaaacatggcctaacagccgtta 60
Query: 64 tcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaagt 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgttggtttaaggacgaaaacagttgttagttacgctgttaggagagctgttaagaagt 120
Query: 124 gttaac 129
||||||
Sbjct: 121 gttaac 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaac 129
||||||||||| ||||||||| |||||||||
Sbjct: 31 gctgttaggagcgctgttaaggagtgttaac 1
>47610_ath-miRf10510-akr:pmrd
Length = 132
Score = 198 bits (100), Expect = 7e-52
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 1 accgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccg 60
|||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagccg 60
Query: 61 ttgtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaaga 120
|| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 ttatcgttggtttaaggacaaaaacagttgttagttacgctgttaggagagctgttaaga 120
Query: 121 agtgttaa 128
||||||||
Sbjct: 121 agtgttaa 128
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaacggt 132
||||||||||| ||||||||| ||||||||||||
Sbjct: 34 gctgttaggagcgctgttaaggagtgttaacggt 1
>47728_ath-miRf10628-akr:pmrd
Length = 132
Score = 190 bits (96), Expect = 2e-49
Identities = 120/128 (93%)
Strand = Plus / Plus
Query: 1 accgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccg 60
|||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagccg 60
Query: 61 ttgtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaaga 120
|| | |||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 ttattgttggtttaaggacaaaaacagttgttagttacgctgttaggagagctgttaaga 120
Query: 121 agtgttaa 128
||||||||
Sbjct: 121 agtgttaa 128
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaacggt 132
||||||||||| ||||||||| ||||||||||||
Sbjct: 34 gctgttaggagcgctgttaaggagtgttaacggt 1
>47342_ath-miRf10242-akr:pmrd
Length = 132
Score = 190 bits (96), Expect = 2e-49
Identities = 123/132 (93%)
Strand = Plus / Plus
Query: 1 accgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccg 60
|||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctg 60
Query: 61 ttgtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaaga 120
|| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 61 ttatcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaaga 120
Query: 121 agtgttaacggt 132
||| ||||||||
Sbjct: 121 agttttaacggt 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaacggt 132
||||||||||| ||||||||| ||||||||||||
Sbjct: 34 gctgttaggagcgctgttaaggagtgttaacggt 1
>47474_ath-miRf10374-akr:pmrd
Length = 176
Score = 182 bits (92), Expect = 4e-47
Identities = 119/128 (92%)
Strand = Plus / Minus
Query: 5 ttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgttgt 64
|||||| | ||||| |||||||||||||||| ||||||||| |||||||||| |||| |
Sbjct: 150 ttaacactccttaacagcgctcctaacagccgttacaaaacgtggcctaacaatcgttat 91
Query: 65 cgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaagtg 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 90 cgttggtttaaggacgaaaacagttgttagttacgctgttaggagagctgttaagaagtg 31
Query: 125 ttaacggt 132
||||||||
Sbjct: 30 ttaacggt 23
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 accgttaacatttcttaatagcgctcctaacagc 34
|||||||||| ||||||| ||| |||||||||||
Sbjct: 23 accgttaacacttcttaacagctctcctaacagc 56
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 gctgttaggagagctgttaagaagtgttaa 128
||||||||||| ||||||||| ||||||||
Sbjct: 121 gctgttaggagcgctgttaaggagtgttaa 150
>47162_ath-miRf10062-akr:pmrd
Length = 132
Score = 182 bits (92), Expect = 4e-47
Identities = 119/128 (92%)
Strand = Plus / Plus
Query: 5 ttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgttgt 64
|||||| | ||||| |||||||||||||||| ||||||||| |||||||||| |||| |
Sbjct: 5 ttaacactccttaacagcgctcctaacagccgttacaaaacgtggcctaacaatcgttat 64
Query: 65 cgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaagtg 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgttggtttaaggacgaaaacagttgttagttacgctgttaggagagctgttaagaagtg 124
Query: 125 ttaacggt 132
||||||||
Sbjct: 125 ttaacggt 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagtgttaa 128
||||||||||| ||||||||| ||||||||
Sbjct: 34 gctgttaggagcgctgttaaggagtgttaa 5
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1 accgttaacatttcttaatagcgctcctaacagc 34
|||||||||| ||||||| ||| |||||||||||
Sbjct: 132 accgttaacacttcttaacagctctcctaacagc 99
