miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51035_osa-miRf11820-akr:pmrd
Length = 83
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacgtgccgtaactacctgaccgtcactgatgactca 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7 cccgtcacagatgagtcatcagtgacgtgtcgtaactacctgaccgtcactgatgactca 66
Query: 61 tctctgacggg 71
|||||||||||
Sbjct: 67 tctctgacggg 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 cgtcactgatgactcatctctgacggg 71
||||||||||||||||||| |||||||
Sbjct: 33 cgtcactgatgactcatctgtgacggg 7
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
||||||| |||||||||||||||||||
Sbjct: 77 cccgtcagagatgagtcatcagtgacg 51
>50466_osa-miRf11251-akr:pmrd
Length = 71
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 5 tcacagatgagtcatcagtgacgtgccgtaactacctgaccgtcactgatgactcatctc 64
||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 5 tcacatatgagttatcagtgacgtgtcgtaactacctgtccgtcactgatgactcatctc 64
Query: 65 tgacggg 71
|||||||
Sbjct: 65 tgacggg 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
||||||| |||||||||||||||||||
Sbjct: 71 cccgtcagagatgagtcatcagtgacg 45
>50863_osa-miRf11648-akr:pmrd
Length = 88
Score = 61.9 bits (31), Expect = 5e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacgtgccgtaactacctgaccgtcactgatgactca 60
|||||||||||||||||||| ||||||||| ||| || || ||||||| |||||||||
Sbjct: 8 cccgtcacagatgagtcatctgtgacgtgctataatta-atgcccgtcacagatgactca 66
Query: 61 tctctgacggg 71
||| |||||||
Sbjct: 67 tctatgacggg 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 45 cgtcactgatgactcatctctgacggg 71
|||||| |||||||||||| |||||||
Sbjct: 34 cgtcacagatgactcatctgtgacggg 8
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
||||||| |||||||||||| ||||||
Sbjct: 77 cccgtcatagatgagtcatctgtgacg 51
>50882_osa-miRf11667-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tcacagatgagtcatcagtgacg 27
|||||||||||||||||||||||
Sbjct: 16 tcacagatgagtcatcagtgacg 38
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||||||||||
Sbjct: 76 cccgtcaccgatgagtcatcagtgacg 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 44 ccgtcactgatgactcatct 63
||||||||||||||||||||
Sbjct: 39 ccgtcactgatgactcatct 20
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 44 ccgtcactgatgactcatctctgacggg 71
||||||||||||||||||| |||||||
Sbjct: 103 ccgtcactgatgactcatcggtgacggg 76
>50681_osa-miRf11466-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||||||||||
Sbjct: 6 cccgtcacagatgactcatcagtgacg 32
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 44 ccgtcactgatgactcatctctgacggg 71
||||||||||||| |||||| |||||||
Sbjct: 33 ccgtcactgatgagtcatctgtgacggg 6
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||| ||||||
Sbjct: 34 cccgtcactgatgagtcatctgtgacg 8
>50680_osa-miRf11465-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||||||||||
Sbjct: 103 cccgtcacagatgactcatcagtgacg 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 44 ccgtcactgatgactcatctctgacggg 71
||||||||||||| |||||| |||||||
Sbjct: 76 ccgtcactgatgagtcatctgtgacggg 103
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||| ||||||
Sbjct: 75 cccgtcactgatgagtcatctgtgacg 101
>50679_osa-miRf11464-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||||||||||
Sbjct: 104 cccgtcacagatgactcatcagtgacg 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 44 ccgtcactgatgactcatctctgacggg 71
||||||||||||| |||||| |||||||
Sbjct: 77 ccgtcactgatgagtcatctgtgacggg 104
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||| ||||||
Sbjct: 76 cccgtcactgatgagtcatctgtgacg 102
>50662_osa-miRf11447-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 12 cccgtcacagatgagtcatccgtgacg 38
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 45 cgtcactgatgactcatctctgacggg 71
|||||| |||||||||||| |||||||
Sbjct: 38 cgtcacggatgactcatctgtgacggg 12
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||| ||||||||||||||| ||||||
Sbjct: 104 cccgacacagatgagtcatcggtgacg 78
>50661_osa-miRf11446-akr:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 105 cccgtcacagatgagtcatccgtgacg 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||| ||||||||||||||| ||||||
Sbjct: 13 cccgacacagatgagtcatcggtgacg 39
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 45 cgtcactgatgactcatctctgacggg 71
|||||| |||||||||||| |||||||
Sbjct: 79 cgtcacggatgactcatctgtgacggg 105
>50660_osa-miRf11445-akr:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 105 cccgtcacagatgagtcatccgtgacg 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||| ||||||||||||||| ||||||
Sbjct: 13 cccgacacagatgagtcatcggtgacg 39
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 45 cgtcactgatgactcatctctgacggg 71
|||||| |||||||||||| |||||||
Sbjct: 79 cgtcacggatgactcatctgtgacggg 105
>50264_osa-miRf11049-akr:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 93 cccgtcacagatgagtcatctgtgacg 119
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 44 ccgtcactgatgactcatctctgacggg 71
||||||| |||||||||||| |||||||
Sbjct: 120 ccgtcacagatgactcatctgtgacggg 93
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||| ||||||
Sbjct: 121 cccgtcacagatgactcatctgtgacg 95
>49781_osa-miRf10566-akr:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||||||||||
Sbjct: 71 cccgtcacggatgagtcatcagtgacg 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 44 ccgtcactgatgactcatctctgacggg 71
||||||||||||||||||| |||||||
Sbjct: 98 ccgtcactgatgactcatccgtgacggg 71
>50703_osa-miRf11488-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtga 25
|||||||||||||||||||| ||||
Sbjct: 4 cccgtcacagatgagtcatcggtga 28
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
||||| |||||||||||||| ||||||
Sbjct: 96 cccgttacagatgagtcatccgtgacg 70
>50702_osa-miRf11487-akr:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtga 25
|||||||||||||||||||| ||||
Sbjct: 6 cccgtcacagatgagtcatcggtga 30
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
||||| |||||||||||||| ||||||
Sbjct: 98 cccgttacagatgagtcatccgtgacg 72
>50041_osa-miRf10826-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2 ccgtcacagatgagtcatcagtgac 26
||||||||||||||||||| |||||
Sbjct: 100 ccgtcacagatgagtcatcggtgac 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatc 20
||||||||||||||||||||
Sbjct: 9 cccgtcacagatgagtcatc 28
>51194_osa-miRf11979-akr:pmrd
Length = 161
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatc 20
||||||||||||||||||||
Sbjct: 17 cccgtcacagatgagtcatc 36
>50939_osa-miRf11724-akr:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4 gtcacagatgagtcatcagtgacg 27
||||||||||||||||| ||||||
Sbjct: 35 gtcacagatgagtcatctgtgacg 12
>50148_osa-miRf10933-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatc 20
||||||||||||||||||||
Sbjct: 67 cccgtcacagatgagtcatc 48
>49916_osa-miRf10701-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatc 20
||||||||||||||||||||
Sbjct: 68 cccgtcacagatgagtcatc 87
>49772_osa-miRf10557-akr:pmrd
Length = 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatc 20
||||||||||||||||||||
Sbjct: 20 cccgtcacagatgagtcatc 1
>51121_osa-miRf11906-akr:pmrd
Length = 96
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||| ||||||
Sbjct: 35 cccgtcacagatgactcatcggtgacg 61
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||| ||||||
Sbjct: 63 cccgtcaccgatgagtcatctgtgacg 37
>51026_osa-miRf11811-akr:pmrd
Length = 95
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||| ||||||||||||| ||||||
Sbjct: 2 cccgtcgcagatgagtcatccgtgacg 28
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||| ||||||
Sbjct: 66 cccgtcacggatgagtcatctgtgacg 92
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||| ||||||
Sbjct: 94 cccgtcacagatgactcatccgtgacg 68
>49610_osa-miRf10395-akr:pmrd
Length = 96
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||| ||||||
Sbjct: 35 cccgtcacagatgactcatcggtgacg 61
>49288_osa-miRf10073-akr:pmrd
Length = 109
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 4 gtcacagatgagtcatcagtgac 26
||||||||||||||||| |||||
Sbjct: 12 gtcacagatgagtcatccgtgac 34
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||| ||||||
Sbjct: 73 cccgtcaccgatgagtcatctgtgacg 99
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||| ||||| ||||||
Sbjct: 101 cccgtcacagatgactcatcggtgacg 75
