miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00885;MIR821;AAAA02031645.1/4498-4258 39946:Oryza sativa Indica
Group
Length = 241
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||| ||||||||||||||||||
Sbjct: 139 cccgtcaccgatgagtcatcagtgacg 165
>RF00885;MIR821;AAAA02035201.1/1122-1416 39946:Oryza sativa Indica
Group
Length = 295
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 194 cccgtcacagatgagtcatccgtgacg 168
>RF00885;MIR821;AL662986.3/147012-147253 39947:Oryza sativa Japonica
Group
Length = 242
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 104 cccgtcacagatgagtcatctgtgacg 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 168 cccgtcacagatgagtcatccgtgacg 142
>RF00885;MIR821;AP006846.2/21640-21904 39947:Oryza sativa Japonica
Group
Length = 265
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 179 cccgtcacagatgagtcatccgtgacg 153
>RF00885;MIR821;AP004836.2/137413-137675 39947:Oryza sativa Japonica
Group
Length = 263
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 179 cccgtcacagatgagtcatccgtgacg 153
>RF00885;MIR821;AC134235.2/19664-19400 39947:Oryza sativa Japonica
Group
Length = 265
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 87 cccgtcacagatgagtcatccgtgacg 113
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 cccgtcacagatgagtcatcagtgacg 27
|||||||||||||||||||| ||||||
Sbjct: 151 cccgtcacagatgagtcatctgtgacg 177
>RF00885;MIR821;AC136216.2/82872-82610 39947:Oryza sativa Japonica
Group
Length = 263
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 ccgtcacagatgagtcatcagtgac 26
||||||||||||||||||| |||||
Sbjct: 88 ccgtcacagatgagtcatcggtgac 112
