miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 139 bits (70), Expect = 8e-33
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacgaacaac 68
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaac 60
Query: 69 acgaaccgatcgataaacctctgcatccagt 99
|||||||||||||||||||||||||||||||
Sbjct: 61 acgaaccgatcgataaacctctgcatccagt 91
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacgaacaac 68
|||||||||||||||||||||||||| |||||| | |||| |||||| |||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaac 60
Query: 69 acgaaccgatcgataaacctctgcatccag 98
| ||||||||||||||||||||||||||||
Sbjct: 61 atgaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctg 41
|||||||||||||||||||||||||| ||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 66 aacacgaaccgatcgataaacctctgcatccag 98
|||| ||| ||||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctg 41
|||||||||||||||||||||||||| ||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 72 cgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatcttttcctg 41
|||||||||||||||||||||||| ||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gatcgataaacctctgcatccag 98
|||||||||||||||||||||||
Sbjct: 65 gatcgataaacctctgcatccag 87
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctgaa 43
||||||| |||||||||||||||||| ||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctgaa 35
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctgaa 43
||||||| |||||||||||||||||| ||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctgaa 35
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccagt 99
|||||||||||||||||||||||||
Sbjct: 134 cgatcgataaacctctgcatccagt 158
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccagt 99
|||||||||||||||||||||||||
Sbjct: 135 cgatcgataaacctctgcatccagt 159
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatccag 131
