miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51710_ptc-miR319d:pmrd
Length = 193
Score = 337 bits (170), Expect = 2e-93
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72
Query: 61 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 132
Query: 121 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 182
>51709_ptc-miR319c:pmrd
Length = 196
Score = 234 bits (118), Expect = 2e-62
Identities = 161/173 (93%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72
Query: 61 attcaaacacagtagacaaggagtg-gcag--cggctgctattgtgaatgtgtgaatgac 117
|||||||||||||||| | || | |||| ||||||||||||||||||||||||||
Sbjct: 73 attcaaacacagtagaaattaagggagcagtatggctgctattgtgaatgtgtgaatgat 132
Query: 118 gcgggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gcgggagataaatttcatccttttcttctctgtgcttggactgaagggagctc 185
>54846_vvi-miR319f:pmrd
Length = 193
Score = 167 bits (84), Expect = 3e-42
Identities = 149/170 (87%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggatgggttaggggtttggattagctgccgactcattc 72
Query: 61 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 120
|||||||||||||||| | | || | | | ||| ||||||||||||||||| |||
Sbjct: 73 attcaaacacagtagaatggaaatg---gagtttactactgtgaatgtgtgaatgatgcg 129
Query: 121 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
|||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 130 ggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctc 179
>51713_ptc-miR319g:pmrd
Length = 204
Score = 75.8 bits (38), Expect = 1e-14
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 94 tgctattgtgaatgtgtgaatgacgcgggagattaatttc-atccttttcttctctgtgc 152
||||| ||||| ||||||||||| ||||||||| | |||| ||||| | ||| |||||||
Sbjct: 116 tgctactgtgattgtgtgaatgatgcgggagataattttccatcctctccttttctgtgc 175
Query: 153 ttggactgaagggagctc 170
||||||||||||||||||
Sbjct: 176 ttggactgaagggagctc 193
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tagctgccgactcattcattcaa 66
|||||||||||||||||||||||
Sbjct: 58 tagctgccgactcattcattcaa 80
>51712_ptc-miR319f:pmrd
Length = 202
Score = 69.9 bits (35), Expect = 6e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaa-gggtttggattagctgccgactcatt 59
||||||||||||| ||||||||||| || ||| ||| ||| ||||||||||||||||||
Sbjct: 14 gagcttccttcagcccactcatggataggagaaaggggttgaattagctgccgactcatt 73
Query: 60 cattcaa 66
|||||||
Sbjct: 74 cattcaa 80
Score = 60.0 bits (30), Expect = 6e-10
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 94 tgctattgtgaatgtgtgaatgacgcgggagattaattt-catccttttcttctctgtgc 152
||||| ||||| ||||||||||| ||||||||| | ||| ||||| | || |||||||
Sbjct: 114 tgctactgtgattgtgtgaatgatgcgggagataattttacatcccctctttttctgtgc 173
Query: 153 ttggactgaagggagctc 170
||||||||||||||||||
Sbjct: 174 ttggactgaagggagctc 191
>51351_ppl-miR319:pmrd
Length = 204
Score = 69.9 bits (35), Expect = 6e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaa-gggtttggattagctgccgactcatt 59
||||||||||||| ||||||||||| || ||| ||| ||| ||||||||||||||||||
Sbjct: 13 gagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactcatt 72
Query: 60 cattcaa 66
|||||||
Sbjct: 73 cattcaa 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 94 tgctattgtgaatgtgtgaatgacgcgggagattaattt-catccttttcttctctgtgc 152
||||| ||||| ||||||||||| ||||||||| ||| ||||| | || |||||||
Sbjct: 114 tgctactgtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgc 173
Query: 153 ttggactgaagggagctc 170
||||||||||||||||||
Sbjct: 174 ttggactgaagggagctc 191
>46994_ath-miR319c:pmrd
Length = 199
Score = 52.0 bits (26), Expect = 1e-07
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 101 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 160
|||| ||||||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
Query: 161 aagggagctc 170
||||||||||
Sbjct: 178 aagggagctc 187
>46993_ath-miR319b:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 142 cttctctgtgcttggactgaagggagctc 170
||||||| |||||||||||||||||||||
Sbjct: 141 cttctctatgcttggactgaagggagctc 169
>54844_vvi-miR319c:pmrd
Length = 182
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
||||||||||||||||||||||||
Sbjct: 145 ctgtgcttggactgaagggagctc 168
Score = 46.1 bits (23), Expect = 9e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||||| ||||||||||||||||| || | ||| || | |||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggatt-gaattagctgccgactcattc 71
Query: 61 attcaaa 67
|| ||||
Sbjct: 72 atccaaa 78
>54380_pvu-miR319c:pmrd
Length = 734
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
||||||| ||||||||||||||||||||
Sbjct: 400 ttctctgagcttggactgaagggagctc 427
>48574_gma-miR319c:pmrd
Length = 221
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||||||||||||||||| |||||||
Sbjct: 173 ttctctgtgcttggactgaaaggagctc 200
>51707_ptc-miR319a:pmrd
Length = 188
Score = 46.1 bits (23), Expect = 9e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||||| ||||||||||||||||| || | ||| ||| |||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggattta-attagctgccgactcattc 71
Query: 61 attcaaa 67
|| ||||
Sbjct: 72 atccaaa 78
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 154 ctgtacttggactgaagggagctc 177
>55053_zma-miR319e:pmrd
Length = 173
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ggattagctgccgactcattca 61
||||||||||||||||||||||
Sbjct: 41 ggattagctgccgactcattca 62
>55052_zma-miR319d:pmrd
Length = 212
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ggattagctgccgactcattca 61
||||||||||||||||||||||
Sbjct: 61 ggattagctgccgactcattca 82
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattcaaa 67
||||||||||||||||||||| ||||
Sbjct: 64 attagctgccgactcattcatccaaa 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 164 ctgtacttggactgaagggagctc 187
>48572_gma-miR319a:pmrd
Length = 207
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattcaaa 67
||||||||||||||||||||| ||||
Sbjct: 63 attagctgccgactcattcatccaaa 88
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatgg 24
|||||| |||||||||||||||||
Sbjct: 23 gagctttcttcagtccactcatgg 46
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 163 ctgtacttggactgaagggagctc 186
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 150 tgcttggactgaagggagctc 170
|||||||||||||||||||||
Sbjct: 174 tgcttggactgaagggagctc 194
>48915_osa-miR319b:pmrd
Length = 197
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||| ||||||||||||||||||| ||| |||| | | |||||||||||||||||||
Sbjct: 14 gagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactcattc 72
Query: 61 a 61
|
Sbjct: 73 a 73
>46884_aqc-miR319:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 110 tgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactgaagggagct 169
||||||| ||||||||||||| ||| | | ||||| ||| ||||||||||||||||||
Sbjct: 113 tgaatgatccgggagattaattggatcttatgcttct-tgtacttggactgaagggagct 171
Query: 170 c 170
|
Sbjct: 172 c 172
>55051_zma-miR319c:pmrd
Length = 216
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattca 65
||||||||||||||||| ||||||
Sbjct: 63 attagctgccgactcatccattca 86
>55050_zma-miR319b:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattca 61
||||||||||||||||||||
Sbjct: 64 attagctgccgactcattca 83
>55049_zma-miR319a:pmrd
Length = 209
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattca 65
||||||||||||||||| ||||||
Sbjct: 63 attagctgccgactcatccattca 86
>54754_tar-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctatgattggactgaagggagctc 178
>54670_svi-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctc 178
>54469_sbi-miR319b:pmrd
Length = 179
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattca 65
||||||||||||||||| ||||||
Sbjct: 43 attagctgccgactcatccattca 66
>54468_sbi-miR319:pmrd
Length = 249
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattca 61
||||||||||||||||||||
Sbjct: 76 attagctgccgactcattca 95
>54391_rin-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctc 178
>48788_nof-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctc 178
>48694_mma-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctc 178
>48479_fal-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctc 178
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctc 178
>48476_dso-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctc 178
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 153 ttctctttgattggactgaagggagctc 180
>48422_cor-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 152 ttctctttgattggactgaagggagctc 179
>48421_cmi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 152 ttctctttgattggactgaagggagctc 179
>48415_bvl-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctc 178
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 47 ttctctttgattggactgaagggagctc 20
>46992_ath-miR319a:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 144 ttctctttgattggactgaagggagctc 171
>46860_ape-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctc 178
>46856_ahi-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctc 178
>46855_aha-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctc 178
>46846_acb-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 150 ttctctttgattggactgaagggagctc 177
