miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52197_ptc-miRf10375-akr:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 2 ttttatcgacggattaattctgtcggtgtgagacataaaaaccgtcggcaatacttttac 61
||||| |||||||||||||| |||||||| || ||| ||| ||||||| || | |||| |
Sbjct: 99 ttttaccgacggattaattccgtcggtgtaaggcatgaaatccgtcggtaacatttttcc 40
Query: 62 cgacg 66
|||||
Sbjct: 39 cgacg 35
>53006_ptc-miRf11184-akr:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 56 ttttaccgacggattcgccgacggaataagtccgtcgg 93
||||||||||| || |||||||||||||||||||||
Sbjct: 45 ttttaccgacgtcatcaccgacggaataagtccgtcgg 8
>52296_ptc-miRf10474-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtgt 30
|||||| |||||||||||||| ||||||||
Sbjct: 2 gttttaccgacggattaattccgtcggtgt 31
>51978_ptc-miRf10156-akr:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 56 ttttaccgacggattcgccgacggaataagtccgtcgg 93
||||||||||| || |||||||||||||||||||||
Sbjct: 45 ttttaccgacgtcatcaccgacggaataagtccgtcgg 8
>54335_ptc-miRf12513-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 99 gttttaccgacggattaattccgtcggtg 71
>54297_ptc-miRf12475-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 101 gttttaccgacggattaattccgtcggtg 73
>54104_ptc-miRf12282-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>53918_ptc-miRf12096-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 99 gttttaccgacggattaattccgtcggtg 71
>53882_ptc-miRf12060-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 101 gttttaccgacggattaattccgtcggtg 73
>53681_ptc-miRf11859-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 99 gttttaccgacggattaattccgtcggtg 71
>53599_ptc-miRf11777-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 ccgacggaataagtccgtcgg 93
|||||||||||||||||||||
Sbjct: 10 ccgacggaataagtccgtcgg 30
>53526_ptc-miRf11704-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>53345_ptc-miRf11523-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 101 gttttaccgacggattaattccgtcggtg 73
>53270_ptc-miRf11448-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>53262_ptc-miRf11440-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 101 gttttaccgacggattaattccgtcggtg 73
>53194_ptc-miRf11372-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 101 gttttaccgacggattaattccgtcggtg 73
>53027_ptc-miRf11205-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>52858_ptc-miRf11036-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 99 gttttaccgacggattaattccgtcggtg 71
>52831_ptc-miRf11009-akr:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 102 gttttaccgacggattaattccgtcggtg 74
>52673_ptc-miRf10851-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtgtgagacataaaaaccgtcggcaatactttta 60
|||||| ||||||| |||||| ||||||| || || ||| ||||||| || | | ||
Sbjct: 1 gttttaccgacggactaattccgtcggtgacagcaatgaaatccgtcggtaaaaataata 60
Query: 61 ccgacggattcgccgacggaataagtccgtcgg 93
|||||||| ||||||||||| | |||||||||
Sbjct: 61 ccgacggactcgccgacggatcacgtccgtcgg 93
>52637_ptc-miRf10815-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>52376_ptc-miRf10554-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>52325_ptc-miRf10503-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>52264_ptc-miRf10442-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>52166_ptc-miRf10344-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||||||||||| |||||| |||||||
Sbjct: 1 gttttatcgacggactaattccgtcggtg 29
>52114_ptc-miRf10292-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>52088_ptc-miRf10266-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggtg 29
|||||| |||||||||||||| |||||||
Sbjct: 1 gttttaccgacggattaattccgtcggtg 29
>52130_ptc-miRf10308-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2 ttttatcgacggattaattctgtcggtg 29
||||| ||||||| ||||||||||||||
Sbjct: 5 ttttaccgacggactaattctgtcggtg 32
>51991_ptc-miRf10169-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gttttatcgacggattaattctgtcggt 28
|||||| ||||||| |||||||||||||
Sbjct: 1 gttttaccgacggactaattctgtcggt 28
