miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 93.7 bits (47), Expect = 9e-19
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 23 tgtgcatggtggagaagcagggcacgtgcattaccatccaatgccgc 69
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgtgcatggtggagaagcagggcacgtgcattaccatccaatgccgc 48
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 129 tggacggatggttcttcatgtgcccatcttctccaccgagcacaa 173
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tggatggatggttcttcatgtgcccatcttctccaccgagcacaa 146
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 24 gtgcatggtggagaagcagggcacgtgcattaccatcca 62
||||| |||||||||||||||||||||||||||||||||
Sbjct: 3 gtgcacggtggagaagcagggcacgtgcattaccatcca 41
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 134 ggatggttcttcatgtgcccatcttctccaccgagcac 171
|||||||||||||||||||| |||||||||||||||||
Sbjct: 74 ggatggttcttcatgtgcccgtcttctccaccgagcac 111
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcattac 56
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 ggtggagaagcagggcacgtgcatt 54
|||||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgcatt 33
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ggtggagaagcagggcacgtgcat 53
||||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgcat 32
>RF00647;MIR164;AC226813.1/114113-114237 63629:Oryza minuta
Length = 125
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tgtgcatggtggagaagcagggcacgtg 50
|||||| |||||||||||||||||||||
Sbjct: 2 tgtgcagggtggagaagcagggcacgtg 29
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 134 ggatggttcttcatgtgcccatcttctccaccgagcac 171
|||||| | |||||||| || |||||||||||||||||
Sbjct: 86 ggatgggtgttcatgtgtccgtcttctccaccgagcac 123
>RF00647;MIR164;ABRL01001123.1/4697-4828 65489:Oryza barthii
Length = 132
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tgtgcatggtggagaagcagggcacgtg 50
|||||| |||||||||||||||||||||
Sbjct: 2 tgtgcagggtggagaagcagggcacgtg 29
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 134 ggatggttcttcatgtgcccatcttctccaccgagcac 171
||||||| |||||||| || |||||||||||||||||
Sbjct: 93 ggatggtcgttcatgtgtccgtcttctccaccgagcac 130
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 gcatggtggagaagcagggcacgtgca 52
||||| |||||||||||||||||||||
Sbjct: 5 gcatgatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
Length = 80
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tggtggagaagcagggcacgtgc 51
|||||||||||||||||||||||
Sbjct: 8 tggtggagaagcagggcacgtgc 30
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 catggtggagaagcagggcacgtgca 52
|||| |||||||||||||||||||||
Sbjct: 6 catgttggagaagcagggcacgtgca 31
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcat 53
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tggagaagcagggcacgtgcat 53
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
