miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54761_tur-miR1120:pmrd
Length = 84
Score = 153 bits (77), Expect = 2e-38
Identities = 84/85 (98%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 tattccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tattccctctgtaaactaatataagaccttttagatcactaa-gtagtgatctaaaaggt 59
Query: 61 cttatattagtttacagagggagta 85
|||||||||||||||||||||||||
Sbjct: 60 cttatattagtttacagagggagta 84
Score = 125 bits (63), Expect = 5e-30
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 4 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 81 tccctctgtaaactaatataagaccttttagatcactact-tagtgatctaaaaggtctt 23
Query: 64 atattagtttacagaggga 82
|||||||||||||||||||
Sbjct: 22 atattagtttacagaggga 4
>54696_tae-miR1121:pmrd
Length = 98
Score = 67.9 bits (34), Expect = 1e-12
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 4 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 63
|||||||||||| ||||| ||| ||||||||||| ||||||||||||||| | ||||
Sbjct: 12 tccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctctt 71
Query: 64 atattagtttacagagggagta 85
||||| ||||| |||||||||
Sbjct: 72 atatttctttacggagggagta 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 4 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 63
|||||| ||||| ||||||||| | |||||||||||| ||||||||||| |||
Sbjct: 90 tccctccgtaaagaaatataagagcgtttagatcactacttaagtgatctaaacactcta 31
Query: 64 atattagtttacagagggagta 85
||||| |||||||||||||||
Sbjct: 30 atatttctttacagagggagta 9
>48304_ave-miR1120:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 68/82 (82%), Gaps = 6/82 (7%)
Strand = Plus / Minus
Query: 4 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 63
|||||||||||| ||||||||| | ||||||||| |||||||||||| | ||||
Sbjct: 79 tccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgctctt 26
Query: 64 atattagtttacagagggagta 85
||||| |||||||||||||||
Sbjct: 25 atatttctttacagagggagta 4
Score = 54.0 bits (27), Expect = 2e-08
Identities = 68/82 (82%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 4 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 63
|||||||||||| ||||||||| | |||||||||||| ||||||||| | ||||
Sbjct: 7 tccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgctctt 60
Query: 64 atattagtttacagagggagta 85
||||| |||||||||||||||
Sbjct: 61 atatttctttacagagggagta 82
