miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 100 acttgccaaaggagagttgccctttgactgcttc 133
||||||||||||||||||||||| | ||||||||
Sbjct: 82 acttgccaaaggagagttgccctgtcactgcttc 115
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 100 acttgccaaaggagagttgccctttgactgctt 132
||||||||||||||||||||||| || ||||||
Sbjct: 70 acttgccaaaggagagttgccctgtggctgctt 102
>RF00445;mir-399;AASG02006945.1/8927-9041 3988:Ricinus communis
(castor bean)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 101 cttgccaaaggagagttgccctttgactgctt 132
||||||||||||||| |||||| |||||||||
Sbjct: 83 cttgccaaaggagagctgccctgtgactgctt 114
>RF00445;mir-399;ABIM01002081.1/1084-952 3649:Carica papaya (papaya)
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 100 acttgccaaaggagagttgccctttgactgcttc 133
|||||||||||||||| |||||| ||| ||||||
Sbjct: 100 acttgccaaaggagagctgccctgtgattgcttc 133
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 cttgccaaaggagagttgccct 122
||||||||||||||||||||||
Sbjct: 62 cttgccaaaggagagttgccct 83
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 cttgccaaaggagagttgccct 122
||||||||||||||||||||||
Sbjct: 61 cttgccaaaggagagttgccct 82
>RF00445;mir-399;CAAP02003948.1/3813-3690 29760:Vitis vinifera
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 104 gccaaaggagagttgccctttgactgcttc 133
||||||||||||||||||| ||||| ||||
Sbjct: 95 gccaaaggagagttgccctgtgactacttc 124
