miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1 aaataagtgtcttaactctaatactactttatattaaagttagtacaaagttgagacatt 60
|||||||||||| ||||||| ||| ||||| |||||||| |||||||||||||||||| |
Sbjct: 85 aaataagtgtctcaactctagtacaactttgtattaaagctagtacaaagttgagacact 26
Query: 61 tatt 64
||||
Sbjct: 25 tatt 22
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 56.0 bits (28), Expect = 5e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 aaataagtgtcttaactctaatactactttatattaaagttagtacaaagttgagacatt 60
|||||||||||| || || ||| ||||| || |||||||| |||||||||||||||||
Sbjct: 21 aaataagtgtctcaagcttagtacaactttgtactaaagttaatacaaagttgagacatt 80
Query: 61 tatt 64
||||
Sbjct: 81 tatt 84
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 56.0 bits (28), Expect = 5e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 aaataagtgtcttaactctaatactactttatattaaagttagtacaaagttgagacatt 60
|||||||||||| || ||| ||| ||||| || |||||||||||||||||| ||||| |
Sbjct: 21 aaataagtgtctcaagcctagtacaactttgtactaaagttagtacaaagttaagacact 80
Query: 61 tatt 64
||||
Sbjct: 81 tatt 84
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 26 actttatattaaagttagtacaaagttgagacatttatt 64
|||||||||||||||||||| ||||||||| ||| ||||
Sbjct: 60 actttatattaaagttagtataaagttgagtcatctatt 22
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 26 actttatattaaagttagtacaaagttgagacatttatt 64
||||| || |||||||||||||||||||||||| |||||
Sbjct: 53 actttgtactaaagttagtacaaagttgagacacttatt 91
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 35 taaagttagtacaaagttgagacatttatt 64
|||||||| |||||||||||||||||||||
Sbjct: 55 taaagttaatacaaagttgagacatttatt 84
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tagtacaaagttgagacatttatt 64
||||||||||||||||||||||||
Sbjct: 61 tagtacaaagttgagacatttatt 84
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 26 actttatattaaagttagtacaaagttgagacatttatt 64
||||| || ||||||||||||||| |||||||| |||||
Sbjct: 94 actttgtactaaagttagtacaaacttgagacagttatt 132
Score = 42.1 bits (21), Expect = 8e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 1 aaataagtgtcttaactctaatactactttatattaaagttagtacaaagttgagac 57
|||||||||||| ||| || ||| ||||| | |||| ||||||||||||||||||
Sbjct: 21 aaataagtgtctcaaccttagtacaactttgcactaaatttagtacaaagttgagac 77
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 26 actttatattaaagttagtacaaagttgagacatttatt 64
||||| || ||||||||||||||||||||| ||| ||||
Sbjct: 35 actttgtactaaagttagtacaaagttgagtcatctatt 73
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 26 actttatattaaagttagtacaaagttgagacatttatt 64
||||| || ||||||||||||||||||||| ||| ||||
Sbjct: 35 actttgtactaaagttagtacaaagttgagtcatctatt 73
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 26 actttatattaaagttagtacaaagttgagacatttatt 64
|||||| | ||||||||||||||||||||| ||| ||||
Sbjct: 60 actttacactaaagttagtacaaagttgagtcatctatt 22
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 35 taaagttagtacaaagttgagacatttatt 64
||||||||||||||||||||| || |||||
Sbjct: 82 taaagttagtacaaagttgagtcacttatt 111
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 36 aaagttagtacaaagttgagacatttatt 64
|||||||||||||||||||| || |||||
Sbjct: 50 aaagttagtacaaagttgagtcacttatt 22
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 35 taaagttagtacaaagttgag 55
|||||||||||||||||||||
Sbjct: 51 taaagttagtacaaagttgag 31
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 35 taaagttagtacaaagttgag 55
|||||||||||||||||||||
Sbjct: 62 taaagttagtacaaagttgag 42
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 28 tttatattaaagttagtacaaagttgagacatttatt 64
|||||| ||||| |||||||||||| ||||| |||||
Sbjct: 58 tttatagtaaagctagtacaaagttaagacagttatt 22
