miRNEST 2.0, an integrative microRNA resource :: BLAST
>54387_rco-miR162:pmrd
Length = 96
Score = 85.7 bits (43), Expect = 7e-18
Identities = 85/95 (89%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagattttttgttctg-aactgcaat-aa 78
||||||||||||||||||||||||||||||||| | ||||||| || ||| ||| ||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctgga-agattttgttgtgaaacaaaaataaa 61
Query: 79 acacatgaatcgatcgataaacctctgcatccagc 113
|| ||||||||||||||||||||||||||||||||
Sbjct: 62 acgcatgaatcgatcgataaacctctgcatccagc 96
>48493_ghr-miR162a:pmrd
Length = 148
Score = 79.8 bits (40), Expect = 5e-16
Identities = 85/96 (88%), Gaps = 3/96 (3%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagattttttgttctga-actgcaataaa 79
||||||||||||||||||||||||||||||| ||| |||| ||| ||| | | | |||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctg-agaatttt-gttgtgagaataacacaaa 81
Query: 80 cacatgaatcgatcgataaacctctgcatccagcgc 115
|||||||||||||||||||||||||||||||||||
Sbjct: 82 tacatgaatcgatcgataaacctctgcatccagcgc 117
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 7e-15
Identities = 84/98 (85%), Gaps = 6/98 (6%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctggaga-ttttttgttctgaactgcaataaa 79
|||||||||||||||||||||||||||||||| | ||||||||| | || |||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg-----aaa 41
Query: 80 cacatgaatcgatcgataaacctctgcatccagcgctt 117
||||||| |||||||||||||||||||||||||||||
Sbjct: 40 aacatgaaccgatcgataaacctctgcatccagcgctt 3
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 7e-15
Identities = 84/98 (85%), Gaps = 6/98 (6%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctggaga-ttttttgttctgaactgcaataaa 79
|||||||||||||||||||||||||||||||| | ||||||||| | || |||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg-----aaa 41
Query: 80 cacatgaatcgatcgataaacctctgcatccagcgctt 117
||||||| |||||||||||||||||||||||||||||
Sbjct: 40 aacatgaaccgatcgataaacctctgcatccagcgctt 3
>51616_ptc-miR162a:pmrd
Length = 107
Score = 75.8 bits (38), Expect = 7e-15
Identities = 84/98 (85%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctggaga-ttttttgttctgaactgcaataaa 79
|||||||||||||||||||||||||||||||| | ||||||||| | || |||
Sbjct: 11 ctggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg-----aaa 65
Query: 80 cacatgaatcgatcgataaacctctgcatccagcgctt 117
||||||| |||||||||||||||||||||||||||||
Sbjct: 66 aacatgaaccgatcgataaacctctgcatccagcgctt 103
>46937_ath-miR162a:pmrd
Length = 140
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 16 agtcgctggaggcagcggttcatcgatctcttcctg 51
||||||||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 82 catgaatcgatcgataaacctctgcatccagcg 114
||||||| |||||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcg 111
>48545_gma-miR162a:pmrd
Length = 102
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 82 catgaatcgatcgataaacctctgcatccagcgct 116
|||||||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccagcgct 97
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 12 gtgaagtcgctggaggcagcggttcatcgatctcttcctg 51
|||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1 gtgaagtcactggatgcagcggttcatcgatctcttcctg 40
>48423_cpa-miR162a:pmrd
Length = 109
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 15 aagtcgctggaggcagcggttcatcgatctcttcctgg 52
||||| ||||||||||||||||||||||||||||||||
Sbjct: 7 aagtcactggaggcagcggttcatcgatctcttcctgg 44
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 81 acatgaatcgatcgataaacctctgcatccagcg 114
||||||||||||||||||||||||||||||||||
Sbjct: 69 acatgaatcgatcgataaacctctgcatccagcg 102
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagatttttt 61
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaagatttttt 54
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagatttttt 61
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaagatttttt 56
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagatttttt 61
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaagatttttt 56
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagatttttt 61
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaagatttttt 54
>51618_ptc-miR162c:pmrd
Length = 107
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagatttttt 61
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaagatttttt 51
>51617_ptc-miR162b:pmrd
Length = 107
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctggagatttttt 61
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaagatttttt 51
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 85 gaatcgatcgataaacctctgcatccagcgct 116
||||||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccagcgct 11
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 12 gtgaagtcgctggaggcagcggttcatcgatc 43
||||||||||||||||||||||||||||||||
Sbjct: 111 gtgaagtcgctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 12 gtgaagtcgctggaggcagcggttcatcgatc 43
||||||||||||||||||||||||||||||||
Sbjct: 3 gtgaagtcgctggaggcagcggttcatcgatc 34
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 85 gaatcgatcgataaacctctgcatccagcgct 116
||||||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcgct 103
>54784_vvi-miR162:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 13 tgaagtcgctggaggcagcggttcatcgatctcttcctg 51
||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1 tgaagtcactggatgcagcggttcatcgatctcttcctg 39
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 gaatcgatcgataaacctctgcatccagcg 114
|||||| |||||||||||||||||||||||
Sbjct: 66 gaatcggtcgataaacctctgcatccagcg 95
>48682_llu-miR162:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 82 catgaatcgatcgataaacctctgcatccag 112
|||||||||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
||||| ||||||||| |||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctg 31
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 85 gaatcgatcgataaacctctgcatccag 112
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 81 acatgaatcgatcgataaacctctgcatccag 112
|||||||||| |||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 81 acatgaatcgatcgataaacctctgcatcca 111
|||||||||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 81 acatgaatcgatcgataaacctctgcatcca 111
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 22 tggaggcagcggttcatcgatctcttcctg 51
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>48685_lsa-miR162:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 92 tcgataaacctctgcatccagcgct 116
|||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgct 25
>48546_gma-miR162m:pmrd
Length = 367
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 92 tcgataaacctctgcatccagcgct 116
|||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgct 25
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 85 gaatcgatcgataaacctctgcatccag 112
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 85 gaatcgatcgataaacctctgcatccag 112
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 85 gaatcgatcgataaacctctgcatccag 112
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 85 gaatcgatcgataaacctctgcatccag 112
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48690_mdo-miR162:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 82 catgaatcgatcgataaacctctgcatccag 112
||||||||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatct 44
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
