miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51384_ppt-miR319a:pmrd
Length = 169
Score = 335 bits (169), Expect = 8e-93
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 20 gtggagctccgtttcggtccaatagtggctgcgacggaaggtggtcccgctgccgaatca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggagctccgtttcggtccaatagtggctgcgacggaaggtggtcccgctgccgaatca 60
Query: 80 cacgtccgggttgcttatcggggcagggccccgatacggtatccgaacgtttgtcccggg 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacgtccgggttgcttatcggggcagggccccgatacggtatccgaacgtttgtcccggg 120
Query: 140 aactggtcgaccttccgcccggcgtctcttggactgaagggagctccac 188
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactggtcgaccttccgcccggcgtctcttggactgaagggagctccac 169
>51389_ppt-miR319d:pmrd
Length = 170
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 tctcttggactgaagggagctcc 186
|||||||||||||||||||||||
Sbjct: 142 tctcttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 tctcttggactgaagggagctcc 186
|||||||||||||||||||||||
Sbjct: 142 tctcttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 tctcttggactgaagggagctcc 186
|||||||||||||||||||||||
Sbjct: 142 tctcttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 tctcttggactgaagggagctcc 186
|||||||||||||||||||||||
Sbjct: 151 tctcttggactgaagggagctcc 173
>51385_ppt-miR319b:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 tctcttggactgaagggagctcc 186
|||||||||||||||||||||||
Sbjct: 137 tctcttggactgaagggagctcc 159
>51390_ppt-miR319e:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 ctcttggactgaagggagctcc 186
||||||||||||||||||||||
Sbjct: 145 ctcttggactgaagggagctcc 166
>54843_vvi-miR319b:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tcttggactgaagggagctcc 186
|||||||||||||||||||||
Sbjct: 161 tcttggactgaagggagctcc 181
>48687_ltu-miR319:pmrd
Length = 167
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tcttggactgaagggagctcc 186
|||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctcc 166
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctcc 180
>54844_vvi-miR319c:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctcc 169
>54686_tae-miR319a:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctcc 195
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctcc 186
>51707_ptc-miR319a:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 166 tcttggactgaagggagctccact 189
||||||| ||||||||||||||||
Sbjct: 28 tcttggattgaagggagctccact 5
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 ttggactgaagggagctcca 187
||||||||||||||||||||
Sbjct: 184 ttggactgaagggagctcca 203
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 ttggactgaagggagctcca 187
||||||||||||||||||||
Sbjct: 27 ttggactgaagggagctcca 8
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166 tcttggactgaagggagctccact 189
||||||| ||||||||||||||||
Sbjct: 183 tcttggattgaagggagctccact 206
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 ttggactgaagggagctcca 187
||||||||||||||||||||
Sbjct: 20 ttggactgaagggagctcca 1
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>48573_gma-miR319b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctcc 170
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 cttggactgaagggagctcc 186
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
