miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 73.8 bits (37), Expect = 8e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 138 aaagtgagaatcttgatgatgctgcatcagcaataaa 174
|||||||||||||||||||||||||||||||||||||
Sbjct: 123 aaagtgagaatcttgatgatgctgcatcagcaataaa 159
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
|||||||| | ||||||||||||||||||||
Sbjct: 1 ttgtttgcgggtgtagcatcatcaagattca 31
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaataaa 174
|||||||||||||||||||||||||||||||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagcaataaa 90
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 63.9 bits (32), Expect = 8e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 139 aagtgagaatcttgatgatgctgcatcagcaataaa 174
||||||||||||||||||||||||||| ||||||||
Sbjct: 106 aagtgagaatcttgatgatgctgcatcggcaataaa 141
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 63.9 bits (32), Expect = 8e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 139 aagtgagaatcttgatgatgctgcatcagcaataaa 174
||||||||||||||||||||||||||| ||||||||
Sbjct: 127 aagtgagaatcttgatgatgctgcatcggcaataaa 162
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 128 tatttattttaaagtgagaatcttgatgatgctgcatcagcaataaa 174
||||| ||| || |||||||||||||||||||||||||||| |||||
Sbjct: 83 tatttctttgaaggtgagaatcttgatgatgctgcatcagccataaa 129
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
|||||||||| || |||||||||||||||||
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattca 31
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 141 gtgagaatcttgatgatgctgcatcagcaataaa 174
|||||||||||||||||||||||||||| |||||
Sbjct: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
|||||||||| || |||||||||||||||||
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattca 31
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
|||||||||||||||||||||||||||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
|||||||||||||||||||||||||||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagcaa 164
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaataaa 174
|||||||||||||||||||||||| ||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcggcaataaa 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
|||||||| |||||||||||||||||||||
Sbjct: 1 ttgtttgcgcatgtagcatcatcaagattca 31
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
|||||||||||||||||||||||||||||
Sbjct: 90 tgagaatcttgatgatgctgcatcagcaa 118
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
|||||||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 141 gtgagaatcttgatgatgctgcatcagc 168
||||||||||||||||||||||||||||
Sbjct: 127 gtgagaatcttgatgatgctgcatcagc 154
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagca 169
||||||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatcagca 143
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagca 169
||||||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatcagca 134
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 140 agtgagaatcttgatgatgctgcatcagcaa 170
|||| ||||||||||||||||||||||||||
Sbjct: 91 agtgggaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 134 ttttaaagtgagaatcttgatgatgctgcat 164
|||| ||||||||||||||||||||||||||
Sbjct: 121 ttttgaagtgagaatcttgatgatgctgcat 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
|||||||| ||||||||| ||||||||||||
Sbjct: 1 ttgtttgctgatgtagcaccatcaagattca 31
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
|||||||||| ||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattca 31
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaata 172
|||||||||||||||||||||||| ||||||
Sbjct: 89 tgagaatcttgatgatgctgcatcggcaata 119
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
|||||||||| ||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattca 31
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaata 172
|||||||||||||||||||||||| ||||||
Sbjct: 88 tgagaatcttgatgatgctgcatcggcaata 118
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 140 agtgagaatcttgatgatgctgcatc 165
||||||||||||||||||||||||||
Sbjct: 179 agtgagaatcttgatgatgctgcatc 204
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaa 170
||||||||||||||||||||||||||
Sbjct: 68 gaatcttgatgatgctgcatcagcaa 93
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaat 171
|||||||||||||||||||||||| |||||
Sbjct: 84 tgagaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaat 171
||||||||||||||||||||||||| ||||
Sbjct: 77 tgagaatcttgatgatgctgcatcaacaat 106
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatcagcaataaa 174
|||||||||||||||||||||||| || |||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatca 166
|||||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgcatca 107
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagca 169
|||||||||||||||||||||||||
Sbjct: 106 gaatcttgatgatgctgcatcagca 130
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 145 gaatcttgatgatgctgcatcagc 168
||||||||||||||||||||||||
Sbjct: 30 gaatcttgatgatgctgcatcagc 7
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcat 164
|||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcat 101
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatc 165
||||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcatc 102
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgcatc 165
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaat 171
||||||||||||||||||| |||||||
Sbjct: 67 gaatcttgatgatgctgcaccagcaat 93
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 tgtttgcagatgtagcatcatcaagattca 50
||||||| |||| |||||||||||||||||
Sbjct: 2 tgtttgcggatggagcatcatcaagattca 31
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
||||||||||||||||||| | ||||||||
Sbjct: 172 gaatcttgatgatgctgcagcggcaataaa 201
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgca 163
||||||||||||||||||||||
Sbjct: 81 tgagaatcttgatgatgctgca 102
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgca 163
||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgca 112
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
||||||||||||||||||| | ||||||||
Sbjct: 115 gaatcttgatgatgctgcagcggcaataaa 144
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaa 170
||||||||||||||||||||| ||||
Sbjct: 105 gaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaa 170
||||||||||||||||||||| ||||
Sbjct: 154 gaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 tgtttgcagatgtagcatcatcaagattca 50
||||||| |||| |||||||||||||||||
Sbjct: 2 tgtttgctgatggagcatcatcaagattca 31
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 145 gaatcttgatgatgctgcatcagcaa 170
|||||||||||||||| |||||||||
Sbjct: 30 gaatcttgatgatgctccatcagcaa 5
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
||||||||||||||||||| | ||||||||
Sbjct: 127 gaatcttgatgatgctgcagcggcaataaa 156
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 142 tgagaatcttgatgatgctgca 163
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 tgtttgcagatgtagcatcatcaagattca 50
||||||| |||| |||||||||||||||||
Sbjct: 2 tgtttgcggatggagcatcatcaagattca 31
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
||||||||||||||||||| | ||||||||
Sbjct: 111 gaatcttgatgatgctgcagcggcaataaa 140
>RF00452;mir-172;EU869090.1/178-288 39946:Oryza sativa Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaatcttgatgatgctgcatcagcaa 170
||||||||||||||||||| ||||||
Sbjct: 82 gaatcttgatgatgctgcaccagcaa 107
