miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P49691|RL4B_ARATH 60S ribosomal protein L4-2 OS=Arabidopsis
thaliana GN=RPL4D PE=1 SV=2
Length = 407
Score = 79.7 bits (195), Expect = 5e-15
Identities = 35/41 (85%), Positives = 39/41 (95%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGHLGRF+IWTKSA+EKL+SIYGSFEKPSE KK Y+L
Sbjct: 246 KLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVL 286
>sp|Q9SF40|RL4A_ARATH 60S ribosomal protein L4-1 OS=Arabidopsis
thaliana GN=RPL4A PE=2 SV=1
Length = 406
Score = 79.7 bits (195), Expect = 5e-15
Identities = 35/41 (85%), Positives = 39/41 (95%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGHLGRF+IWTKSA+EKL+SIYGSFEKPSE KK Y+L
Sbjct: 245 KLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVL 285
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 OS=Prunus armeniaca
GN=RPL4 PE=2 SV=1
Length = 408
Score = 74.3 bits (181), Expect = 2e-13
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGHLGRF++WTKSA+EKLDSIYGSF+K SE K Y+L
Sbjct: 247 KLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVL 287
>sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium
discoideum GN=rpl4 PE=1 SV=1
Length = 369
Score = 66.2 bits (160), Expect = 6e-11
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGHLGRFIIWTKSA+E+LDS +G+F K S KK Y L
Sbjct: 238 KLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTL 278
>sp|P49669|RL4_TRYBB 60S ribosomal protein L4 OS=Trypanosoma brucei
brucei GN=RPL4 PE=3 SV=1
Length = 374
Score = 62.8 bits (151), Expect = 7e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +3
Query: 6 LAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
LAPGGH+GRFIIWTKSA+EKLD I+G+F +PS K ++L
Sbjct: 238 LAPGGHVGRFIIWTKSAFEKLDKIFGTFTEPSTVKSGFML 277
>sp|P09180|RL4_DROME 60S ribosomal protein L4 OS=Drosophila
melanogaster GN=RpL4 PE=2 SV=2
Length = 401
Score = 58.9 bits (141), Expect = 1e-08
Identities = 24/41 (58%), Positives = 35/41 (85%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF+IWT+SA+ +L+ ++G+++KPS KK Y L
Sbjct: 242 KLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNL 282
>sp|P49165|RL4_URECA 60S ribosomal protein L4 OS=Urechis caupo
GN=RPL4 PE=2 SV=1
Length = 386
Score = 58.5 bits (140), Expect = 1e-08
Identities = 23/40 (57%), Positives = 34/40 (85%)
Frame = +3
Query: 6 LAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+APGGH+GRF IWT+SA+++LD+IYG++++PS K Y L
Sbjct: 239 MAPGGHVGRFCIWTESAFKQLDNIYGTWKRPSAEKSHYNL 278
>sp|P35679|RL4A_SCHPO 60S ribosomal protein L4-A
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=rpl4a PE=1 SV=2
Length = 363
Score = 58.5 bits (140), Expect = 1e-08
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+LAPGGHLGRF+IWTKSA+ LDS++GS + ++ KK Y L
Sbjct: 239 QLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFL 279
>sp|Q9P784|RL4B_SCHPO 60S ribosomal protein L4-B
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=rpl4b PE=2 SV=1
Length = 363
Score = 58.2 bits (139), Expect = 2e-08
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+LAPGGHLGRF+IWTKSA+ LDS++GS + ++ KK Y L
Sbjct: 239 QLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFL 279
>sp|P50878|RL4_RAT 60S ribosomal protein L4 OS=Rattus norvegicus
GN=Rpl4 PE=1 SV=3
Length = 421
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF IWT+SA+ KLD +YG++ K + K Y L
Sbjct: 239 KLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNL 279
>sp|Q5RCR3|RL4_PONAB 60S ribosomal protein L4 OS=Pongo abelii
GN=RPL4 PE=2 SV=1
Length = 427
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF IWT+SA+ KLD +YG++ K + K Y L
Sbjct: 239 KLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNL 279
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 OS=Mus musculus
GN=Rpl4 PE=1 SV=3
Length = 419
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF IWT+SA+ KLD +YG++ K + K Y L
Sbjct: 239 KLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNL 279
>sp|Q4R5P9|RL4_MACFA 60S ribosomal protein L4 OS=Macaca fascicularis
GN=RPL4 PE=2 SV=1
Length = 427
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF IWT+SA+ KLD +YG++ K + K Y L
Sbjct: 239 KLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNL 279
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 OS=Homo sapiens
GN=RPL4 PE=1 SV=5
Length = 427
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF IWT+SA+ KLD +YG++ K + K Y L
Sbjct: 239 KLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNL 279
>sp|Q28346|RL4_CANFA 60S ribosomal protein L4 OS=Canis familiaris
GN=RPL4 PE=1 SV=2
Length = 421
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF IWT+SA+ KLD +YG++ K + K Y L
Sbjct: 239 KLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNL 279
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 OS=Bos taurus GN=RPL4
PE=2 SV=3
Length = 422
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
KLAPGGH+GRF IWT+SA+ KLD +YG++ K + K Y L
Sbjct: 239 KLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNL 279
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B OS=Xenopus laevis
GN=rpl4-b PE=2 SV=2
Length = 401
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+LAPGGH+GRF IWT+SA+ KLD +YG++ K ++ K Y L
Sbjct: 243 RLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNL 283
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4-A OS=Xenopus laevis
GN=rpl4-a PE=2 SV=2
Length = 396
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+LAPGGH+GRF IWT+SA+ KLD +YG++ K ++ K Y L
Sbjct: 243 RLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNL 283
>sp|O02056|RL4_CAEEL 60S ribosomal protein L4 OS=Caenorhabditis
elegans GN=rpl-4 PE=1 SV=3
Length = 345
Score = 53.9 bits (128), Expect = 3e-07
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKR 116
KLAPGGHLGR IIWT+SA++KLD+IYG+ S K+
Sbjct: 238 KLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKK 275
>sp|P14117|RL4_XENTR 60S ribosomal protein L4 (Fragment) OS=Xenopus
tropicalis GN=rpl4 PE=3 SV=1
Length = 96
Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+LA GGH+GRF IWT+S++ KLD +YG++ K ++ K Y L
Sbjct: 13 RLALGGHVGRFCIWTESSFRKLDDLYGTWRKSAKLKADYNL 53
>sp|P49626|RL4B_YEAST 60S ribosomal protein L4-B OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPL4B PE=1
SV=2
Length = 362
Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+LAPG HLGRF+IWT++A+ KLD ++GS E + +K Y L
Sbjct: 237 QLAPGAHLGRFVIWTEAAFTKLDQVWGS-ETVASSKVGYTL 276
>sp|P10664|RL4A_YEAST 60S ribosomal protein L4-A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPL4A PE=1
SV=4
Length = 362
Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +3
Query: 3 KLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSENKKRYIL 125
+LAPG HLGRF+IWT++A+ KLD ++GS E + +K Y L
Sbjct: 237 QLAPGAHLGRFVIWTEAAFTKLDQVWGS-ETVASSKVGYTL 276
