miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 61.9 bits (31), Expect = 1e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 59 aagtttagatcangctggcagcttcaactgctag 92
|||||||||||| |||||||||||||||||||||
Sbjct: 39 aagtttagatcatgctggcagcttcaactgctag 6
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 gctgccacatgatctgatctttcctc 41
||||||||||||||||||||||||||
Sbjct: 88 gctgccacatgatctgatctttcctc 63
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 59 aagtttagatcangctggcagcttcaactgctag 92
|||||||||||| |||||||||||||||||||||
Sbjct: 39 aagtttagatcatgctggcagcttcaactgctag 6
Score = 60.0 bits (30), Expect = 5e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 5 caacaggngaagctgccacatgatctgatctttcctc 41
||||||| || ||||||||||||||||||||||||||
Sbjct: 92 caacaggtgatgctgccacatgatctgatctttcctc 56
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 60.0 bits (30), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 59 aagtttagatcangctggcagcttcaactgcta 91
|||||||||||| ||||||||||||||||||||
Sbjct: 39 aagtttagatcatgctggcagcttcaactgcta 7
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 70/84 (83%), Gaps = 5/84 (5%)
Strand = Plus / Minus
Query: 5 caacaggngaagctgccacatgatctgatctttcctcaacccaaaaaaggaggcaagttt 64
||||||| ||| ||||||||||||||||||| | ||| ||| ||| ||||||||
Sbjct: 88 caacaggtgaaactgccacatgatctgatctctgttcac-----aaagggaagcaagttt 34
Query: 65 agatcangctggcagcttcaactg 88
|||||| |||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaactg 10
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 59 aagtttagatcangctggcagcttcaactgct 90
|||||||||||| |||||||||||||||||||
Sbjct: 39 aagtttagatcatgctggcagcttcaactgct 8
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 76/91 (83%), Gaps = 6/91 (6%)
Strand = Plus / Minus
Query: 5 caacaggngaagctgccacatgatctgat-ctttcctcaacccaaaaaaggaggcaagtt 63
||||||| ||| ||||||||||||||| | ||||||||||| |||||||| | | |
Sbjct: 89 caacaggtgaaactgccacatgatctgtttctttcctcaac-----aaaggaggaaggct 35
Query: 64 tagatcangctggcagcttcaactgctagag 94
|||||| ||||||||||||||||| |||||
Sbjct: 34 aagatcatgctggcagcttcaactgatagag 4
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 56.0 bits (28), Expect = 8e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 62 tttagatcangctggcagcttcaactgctag 92
||||||||| |||||||||||||||||||||
Sbjct: 36 tttagatcatgctggcagcttcaactgctag 6
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 54.0 bits (27), Expect = 3e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 63 ttagatcangctggcagcttcaactgctag 92
|||||||| |||||||||||||||||||||
Sbjct: 35 ttagatcatgctggcagcttcaactgctag 6
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/80 (82%), Gaps = 6/80 (7%)
Strand = Plus / Minus
Query: 9 aggngaagctgccacatgatctgatctttcctcaacccaaaaaaggaggcaagtttagat 68
||| ||| ||||||||||||||||||||||| || | | ||||| ||||| ||||
Sbjct: 83 aggtgaaactgccacatgatctgatctttccccacc------atggagggaagttaagat 30
Query: 69 cangctggcagcttcaactg 88
|| |||||||||||||||||
Sbjct: 29 catgctggcagcttcaactg 10
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 69/84 (82%), Gaps = 5/84 (5%)
Strand = Plus / Minus
Query: 5 caacaggngaagctgccacatgatctgatctttcctcaacccaaaaaaggaggcaagttt 64
|||| || ||| ||||||||||||||||||| |||||||| | ||||| | |||
Sbjct: 88 caacgggtgaaactgccacatgatctgatctctcctcaac-----gagggaggaagattt 34
Query: 65 agatcangctggcagcttcaactg 88
|||||| |||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaactg 10
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 59 aagtttagatcangctggcagcttcaactgcta 91
||||| |||||| ||||||||||||||||||||
Sbjct: 39 aagttgagatcatgctggcagcttcaactgcta 7
Score = 50.1 bits (25), Expect = 5e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 5 caacaggngaagctgccacatgatctgatctttcct 40
||||||| || ||| |||||||||||||||||||||
Sbjct: 89 caacaggtgaggctaccacatgatctgatctttcct 54
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 63 ttagatcangctggcagcttcaactgcta 91
|||||||| ||||||||||||||||||||
Sbjct: 35 ttagatcatgctggcagcttcaactgcta 7
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 65 agatcangctggcagcttcaactgcta 91
|||||| ||||||||||||||||||||
Sbjct: 33 agatcatgctggcagcttcaactgcta 7
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 62 tttagatcangctggcagcttcaactgctag 92
||||||||| ||||||||||| |||||||||
Sbjct: 36 tttagatcatgctggcagctttaactgctag 6
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 58 caagtttagatcangctggcagcttca 84
||||||||||||| |||||||||||||
Sbjct: 40 caagtttagatcatgctggcagcttca 14
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 59 aagtttagatcangctggcagcttcaactgctag 92
||||| |||||| |||||||||||||||| ||||
Sbjct: 39 aagttcagatcatgctggcagcttcaactactag 6
