miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 32 tacagagcttattggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||
Sbjct: 3 tacagagcttattggcattctgtccacctcc 33
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
|||||||||||||||||||| ||| |||||
Sbjct: 101 gaggtgggcatactgccaactgagctctgt 130
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 32 tacagagcttattggcattctgtccacctccact 65
||||||| ||||||||||||||||||||||||||
Sbjct: 3 tacagagtttattggcattctgtccacctccact 36
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
||||||||||||||| |||||||| |||||
Sbjct: 89 gaggtgggcatactgtcaacagagctctgt 118
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
||||||||||||||||||||||||||||||
Sbjct: 80 gaggtgggcatactgccaacagagatctgt 109
>RF00688;MIR394;DQ908352.1/346-226 3635:Gossypium hirsutum (upland
cotton)
Length = 121
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 32 tacagagcttattggcattctgtccacctcca 63
||||||| ||||||||||||||||||||||||
Sbjct: 3 tacagagtttattggcattctgtccacctcca 34
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus
trichocarpa
Length = 99
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 32 tacagagcttattggcattctgtccacctcc 62
||||||| |||||||||||||||||||||||
Sbjct: 3 tacagagtttattggcattctgtccacctcc 33
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
|||||||||||||||||||| ||| |||||
Sbjct: 67 gaggtgggcatactgccaaccgagctctgt 96
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
||||||||||||||||||| ||||||||||
Sbjct: 88 gaggtgggcatactgccaatagagatctgt 117
>RF00688;MIR394;AC009978.3/24986-25106 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
||||||||||||||||||| ||||||||||
Sbjct: 89 gaggtgggcatactgccaatagagatctgt 118
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 33 acagagcttattggcattctgtccacctcc 62
|||||| |||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcc 33
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 32 tacagagcttattggcattctgtccacctcca 63
||||||| || |||||||||||||||||||||
Sbjct: 3 tacagagttttttggcattctgtccacctcca 34
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 gaggtgggcatactgccaacagagatctgt 134
|||||||||||||||||||| ||| |||||
Sbjct: 67 gaggtgggcatactgccaactgagctctgt 96
