miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 93.7 bits (47), Expect = 3e-19
Identities = 70/77 (90%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 ctgttcctttttcctatgcatatacctctttgagatgtaactttacacagaggcataggg 60
||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||| ||
Sbjct: 5 ctgttcctttttcctatgcatatacttctttgacatgtaacttt--aaagaggcataagg 62
Query: 61 catgggaanatggggct 77
|||||||| ||||||||
Sbjct: 63 catgggaaaatggggct 79
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ctgttcctttttcctatgcatatacctctttga 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 ctgttcctttttcctatgcatatacctctttga 37
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 ctgttcctttttcctatgcatatacctctttgag 34
||||||||||||||||||||||||| ||||||||
Sbjct: 5 ctgttcctttttcctatgcatatacttctttgag 38
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 2 tgttcctttttcctatgcatatacctctttgaga 35
|||||||||||||||||||||||| |||||||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttgaga 39
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 3 gttcctttttcctatgcatatacctctttgaga 35
||||||||||||||||||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaga 39
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 gttcctttttcctatgcatatacctctttgag 34
||||||||||||||||||||||| ||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgag 38
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 gttcctttttcctatgcatatacctctttga 33
||||||||||||||||||||||| |||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 cctttttcctatgcatatacctctttgag 34
|||||||||||||||||||| ||||||||
Sbjct: 10 cctttttcctatgcatatacttctttgag 38
