miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45970_miR1439:micropc
Length = 99
Score = 196 bits (99), Expect = 3e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 24 gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 60
Query: 84 tacaaagttgatacagttattttgggacggagggagtat 122
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacaaagttgatacagttattttgggacggagggagtat 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 100 ttattttgggacggagggagta 121
||||||||||||||||||||||
Sbjct: 23 ttattttgggacggagggagta 2
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaataa 46
||||||||||||||||||||||
Sbjct: 98 tactccctccgtcccaaaataa 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 65 aactttgtactagctctagtacaaagtt 92
||||||||||||| |||||||||||||
Sbjct: 69 aactttgtactagagctagtacaaagtt 42
>45205_miR1439:micropc
Length = 99
Score = 196 bits (99), Expect = 3e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 24 gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 60
Query: 84 tacaaagttgatacagttattttgggacggagggagtat 122
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacaaagttgatacagttattttgggacggagggagtat 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 100 ttattttgggacggagggagta 121
||||||||||||||||||||||
Sbjct: 23 ttattttgggacggagggagta 2
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaataa 46
||||||||||||||||||||||
Sbjct: 98 tactccctccgtcccaaaataa 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 65 aactttgtactagctctagtacaaagtt 92
||||||||||||| |||||||||||||
Sbjct: 69 aactttgtactagagctagtacaaagtt 42
>46679_miR1439:micropc
Length = 97
Score = 113 bits (57), Expect = 3e-26
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctagt 84
|||||||||||| ||||||||||| ||| |||||||||| || ||| |||||| |||||
Sbjct: 97 tactccctccgttccaaaataagtgtctcaagcttagtacaattttatactagagctagt 38
Query: 85 acaaagttgatacagttattttgggacggagggagta 121
|||||||||| |||||||||||| |||||||||||||
Sbjct: 37 acaaagttgagacagttattttgagacggagggagta 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 aactttgtactagctctagta 85
|||||||||||||||||||||
Sbjct: 30 aactttgtactagctctagta 50
>45189_miR1439:micropc
Length = 78
Score = 56.0 bits (28), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 83 gtacaaagttgatacagttattttgggacggagggagtat 122
|||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 38 gtactaagttgagacagttattttggaacggagggagtat 77
>46048_miR1439:micropc
Length = 58
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaataagt 48
||||||||||||||||||||||||
Sbjct: 56 tactccctccgtcccaaaataagt 33
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 ttattttgggacggagggagtat 122
|||||||||||||||||||||||
Sbjct: 35 ttattttgggacggagggagtat 57
>45320_miR1439:micropc
Length = 74
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaataagt 48
||||||||||||||||||||||||
Sbjct: 72 tactccctccgtcccaaaataagt 49
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 ttattttgggacggagggagtat 122
|||||||||||||||||||||||
Sbjct: 51 ttattttgggacggagggagtat 73
>45276_miR1439:micropc
Length = 74
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaataagt 48
||||||||||||||||||||||||
Sbjct: 72 tactccctccgtcccaaaataagt 49
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 ttattttgggacggagggagtat 122
|||||||||||||||||||||||
Sbjct: 51 ttattttgggacggagggagtat 73
>45016_miR1439:micropc
Length = 74
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaataagt 48
||||||||||||||||||||||||
Sbjct: 72 tactccctccgtcccaaaataagt 49
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 ttattttgggacggagggagtat 122
|||||||||||||||||||||||
Sbjct: 51 ttattttgggacggagggagtat 73
>46836_miR1439:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tattttgggacggagggagtat 122
||||||||||||||||||||||
Sbjct: 65 tattttgggacggagggagtat 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 25 tactccctccgtcccaaaata 45
|||||||||||||||||||||
Sbjct: 85 tactccctccgtcccaaaata 65
