miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45970_miR1439:micropc
          Length = 99

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 60

                                                
Query: 61 tacaaagttgatacagttattttgggacggagggagta 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacaaagttgatacagttattttgggacggagggagta 98



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 77 ttattttgggacggagggagta 98
          ||||||||||||||||||||||
Sbjct: 23 ttattttgggacggagggagta 2



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 2  tactccctccgtcccaaaataa 23
          ||||||||||||||||||||||
Sbjct: 98 tactccctccgtcccaaaataa 77



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 42 aactttgtactagctctagtacaaagtt 69
          |||||||||||||  |||||||||||||
Sbjct: 69 aactttgtactagagctagtacaaagtt 42




>45205_miR1439:micropc
          Length = 99

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctag 60

                                                
Query: 61 tacaaagttgatacagttattttgggacggagggagta 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacaaagttgatacagttattttgggacggagggagta 98



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 77 ttattttgggacggagggagta 98
          ||||||||||||||||||||||
Sbjct: 23 ttattttgggacggagggagta 2



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 2  tactccctccgtcccaaaataa 23
          ||||||||||||||||||||||
Sbjct: 98 tactccctccgtcccaaaataa 77



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 42 aactttgtactagctctagtacaaagtt 69
          |||||||||||||  |||||||||||||
Sbjct: 69 aactttgtactagagctagtacaaagtt 42




>46679_miR1439:micropc
          Length = 97

 Score =  113 bits (57), Expect = 2e-26
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                      
Query: 2  tactccctccgtcccaaaataagtctcttaagcttagtataactttgtactagctctagt 61
          |||||||||||| ||||||||||| ||| |||||||||| || ||| ||||||  |||||
Sbjct: 97 tactccctccgttccaaaataagtgtctcaagcttagtacaattttatactagagctagt 38

                                               
Query: 62 acaaagttgatacagttattttgggacggagggagta 98
          |||||||||| |||||||||||| |||||||||||||
Sbjct: 37 acaaagttgagacagttattttgagacggagggagta 1



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 aactttgtactagctctagta 62
          |||||||||||||||||||||
Sbjct: 30 aactttgtactagctctagta 50




>45189_miR1439:micropc
          Length = 78

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 60 gtacaaagttgatacagttattttgggacggagggagta 98
          |||| ||||||| ||||||||||||| ||||||||||||
Sbjct: 38 gtactaagttgagacagttattttggaacggagggagta 76




>46048_miR1439:micropc
          Length = 58

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 2  tactccctccgtcccaaaataagt 25
          ||||||||||||||||||||||||
Sbjct: 56 tactccctccgtcccaaaataagt 33



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 ttattttgggacggagggagta 98
          ||||||||||||||||||||||
Sbjct: 35 ttattttgggacggagggagta 56




>45320_miR1439:micropc
          Length = 74

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 2  tactccctccgtcccaaaataagt 25
          ||||||||||||||||||||||||
Sbjct: 72 tactccctccgtcccaaaataagt 49



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 ttattttgggacggagggagta 98
          ||||||||||||||||||||||
Sbjct: 51 ttattttgggacggagggagta 72




>45276_miR1439:micropc
          Length = 74

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 2  tactccctccgtcccaaaataagt 25
          ||||||||||||||||||||||||
Sbjct: 72 tactccctccgtcccaaaataagt 49



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 ttattttgggacggagggagta 98
          ||||||||||||||||||||||
Sbjct: 51 ttattttgggacggagggagta 72




>45016_miR1439:micropc
          Length = 74

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 2  tactccctccgtcccaaaataagt 25
          ||||||||||||||||||||||||
Sbjct: 72 tactccctccgtcccaaaataagt 49



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 ttattttgggacggagggagta 98
          ||||||||||||||||||||||
Sbjct: 51 ttattttgggacggagggagta 72