miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46175_miR156:micropc
          Length = 92

 Score =  182 bits (92), Expect = 4e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaat 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaat 60

                                           
Query: 72  tatgatgcgtgtgctcacttctcttgctgtca 103
           ||||||||||||||||||||||||||||||||
Sbjct: 61  tatgatgcgtgtgctcacttctcttgctgtca 92




>45587_miR156:micropc
          Length = 90

 Score =  178 bits (90), Expect = 6e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 60

                                         
Query: 73  atgatgcgtgtgctcacttctcttgctgtc 102
           ||||||||||||||||||||||||||||||
Sbjct: 61  atgatgcgtgtgctcacttctcttgctgtc 90




>46798_miR156:micropc
          Length = 86

 Score = 87.7 bits (44), Expect = 2e-18
 Identities = 81/92 (88%), Gaps = 6/92 (6%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaat 71
           |||||||||||||||||||||||||| ||||||||||||||| ||| | |||||   |||
Sbjct: 1   tgacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgt--aaat 58

                                           
Query: 72  tatgatgcgtgtgctcacttctcttgctgtca 103
               ||||||||||||||||||||||||||||
Sbjct: 59  ----atgcgtgtgctcacttctcttgctgtca 86




>45125_miR156:micropc
          Length = 84

 Score = 83.8 bits (42), Expect = 3e-17
 Identities = 79/90 (87%), Gaps = 6/90 (6%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 72
           ||||||||||||||||||||||||| ||||||||||||||| ||| | |||||   ||| 
Sbjct: 1   gacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgt--aaat- 57

                                         
Query: 73  atgatgcgtgtgctcacttctcttgctgtc 102
              |||||||||||||||||||||||||||
Sbjct: 58  ---atgcgtgtgctcacttctcttgctgtc 84




>45062_miR156:micropc
          Length = 91

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 83/94 (88%), Gaps = 5/94 (5%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgta 69
           |||||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| |
Sbjct: 1   tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60

                                             
Query: 70  attatgatgcgtgtgctcacttctcttgctgtca 103
           |||   ||||||||||||||||||||||||||||
Sbjct: 61  att---atgcgtgtgctcacttctcttgctgtca 91




>45047_miR156:micropc
          Length = 91

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 83/94 (88%), Gaps = 5/94 (5%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgta 69
           |||||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| |
Sbjct: 1   tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60

                                             
Query: 70  attatgatgcgtgtgctcacttctcttgctgtca 103
           |||   ||||||||||||||||||||||||||||
Sbjct: 61  att---atgcgtgtgctcacttctcttgctgtca 91




>45582_miR156:micropc
          Length = 89

 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 81/92 (88%), Gaps = 5/92 (5%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 70
           ||||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| ||
Sbjct: 1   gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60

                                           
Query: 71  ttatgatgcgtgtgctcacttctcttgctgtc 102
           ||   |||||||||||||||||||||||||||
Sbjct: 61  tt---atgcgtgtgctcacttctcttgctgtc 89




>45113_miR156:micropc
          Length = 89

 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 81/92 (88%), Gaps = 5/92 (5%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 70
           ||||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| ||
Sbjct: 1   gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60

                                           
Query: 71  ttatgatgcgtgtgctcacttctcttgctgtc 102
           ||   |||||||||||||||||||||||||||
Sbjct: 61  tt---atgcgtgtgctcacttctcttgctgtc 89




>45810_miR156:micropc
          Length = 91

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 82/94 (87%), Gaps = 5/94 (5%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgta 69
           |||||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| |
Sbjct: 1   tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60

                                             
Query: 70  attatgatgcgtgtgctcacttctcttgctgtca 103
           |||   |||||||||| |||||||||||||||||
Sbjct: 61  att---atgcgtgtgcccacttctcttgctgtca 91




>44842_miR156:micropc
          Length = 91

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 82/94 (87%), Gaps = 5/94 (5%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgta 69
           |||||||||||||||||||||||| ||||||||||||| | | | ||| |  |||||| |
Sbjct: 1   tgacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttgga 60

                                             
Query: 70  attatgatgcgtgtgctcacttctcttgctgtca 103
           |||   ||||||||||||||||||||||||||||
Sbjct: 61  att---atgcgtgtgctcacttctcttgctgtca 91




>45659_miR156:micropc
          Length = 89

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 80/92 (86%), Gaps = 5/92 (5%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 70
           ||||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| ||
Sbjct: 1   gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60

                                           
Query: 71  ttatgatgcgtgtgctcacttctcttgctgtc 102
           ||   |||||||||| ||||||||||||||||
Sbjct: 61  tt---atgcgtgtgcccacttctcttgctgtc 89




>45528_miR156:micropc
          Length = 89

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 80/92 (86%), Gaps = 5/92 (5%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 70
           ||||||||||||||||||||||| ||||||||||||| | | | ||| |  |||||| ||
Sbjct: 1   gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 60

                                           
Query: 71  ttatgatgcgtgtgctcacttctcttgctgtc 102
           ||   |||||||||||||||||||||||||||
Sbjct: 61  tt---atgcgtgtgctcacttctcttgctgtc 89




>45385_miR156:micropc
          Length = 90

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 79/93 (84%), Gaps = 4/93 (4%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaa 70
           ||||||||||||||||||| | ||  |||| ||||||  ||||| || ||||||||| ||
Sbjct: 1   tgacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaa 60

                                            
Query: 71  ttatgatgcgtgtgctcacttctcttgctgtca 103
           |||||   |||||||||||||||||| ||||||
Sbjct: 61  ttatg---cgtgtgctcacttctctttctgtca 90




>45182_miR156:micropc
          Length = 90

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 79/93 (84%), Gaps = 4/93 (4%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaa 70
           ||||||||||||||||||| | ||  |||| ||||||  ||||| || ||||||||| ||
Sbjct: 1   tgacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaa 60

                                            
Query: 71  ttatgatgcgtgtgctcacttctcttgctgtca 103
           |||||   |||||||||||||||||| ||||||
Sbjct: 61  ttatg---cgtgtgctcacttctctttctgtca 90




>46069_miR156:micropc
          Length = 88

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 77/91 (84%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaat 71
           |||||||||||||||||| | ||  |||| ||||||  ||||| || ||||||||| |||
Sbjct: 1   gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 60

                                          
Query: 72  tatgatgcgtgtgctcacttctcttgctgtc 102
           ||||   |||||||||||||||||| |||||
Sbjct: 61  tatg---cgtgtgctcacttctctttctgtc 88




>46709_miR156:micropc
          Length = 90

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 78/93 (83%), Gaps = 4/93 (4%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgacagaagagagtgagcatatgcaagcaattgtatagagaga-tatgctcttgttgtaa 70
           |||||||||||||||||||   ||  ||||  ||||| ||||| ||| ||||||||| ||
Sbjct: 1   tgacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaa 60

                                            
Query: 71  ttatgatgcgtgtgctcacttctcttgctgtca 103
           ||   ||||||||||||||||||||| ||||||
Sbjct: 61  tt---atgcgtgtgctcacttctctttctgtca 90




>46842_miR156:micropc
          Length = 84

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 70/83 (84%), Gaps = 4/83 (4%)
 Strand = Plus / Plus

                                                                      
Query: 15 cagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaatta 73
          |||||||||||||||| | ||  |||| ||||||  ||||| || ||||||||| |||||
Sbjct: 1  cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 60

                                 
Query: 74 tgatgcgtgtgctcacttctctt 96
          ||   ||||||||||||||||||
Sbjct: 61 tg---cgtgtgctcacttctctt 80




>46803_miR156:micropc
          Length = 88

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 76/91 (83%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  gacagaagagagtgagcatatgcaagcaattgtatagagaga-tatgctcttgttgtaat 71
           ||||||||||||||||||   ||  ||||  ||||| ||||| ||| ||||||||| |||
Sbjct: 1   gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60

                                          
Query: 72  tatgatgcgtgtgctcacttctcttgctgtc 102
           |   ||||||||||||||||||||| |||||
Sbjct: 61  t---atgcgtgtgctcacttctctttctgtc 88




>46151_miR156:micropc
          Length = 99

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 13 gacagaagagagtgagcatatgcaagcaattgtatag 49
          |||||||||||||||||||  ||| ||||||||||||
Sbjct: 1  gacagaagagagtgagcatccgcaggcaattgtatag 37




>46153_miR156:micropc
          Length = 92

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 77  tgcgtgtgctcacttctcttgctgtca 103
           |||||||||||||||||||| ||||||
Sbjct: 66  tgcgtgtgctcacttctctttctgtca 92



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 12 tgacagaagagagtgagcatatgcaagcaattgtata 48
          ||||||||||||||||||| | |||  ||||||||||
Sbjct: 1  tgacagaagagagtgagcacacgcacacaattgtata 37




>45524_miR156:micropc
          Length = 92

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 77  tgcgtgtgctcacttctcttgctgtca 103
           |||||||||||||||||||| ||||||
Sbjct: 66  tgcgtgtgctcacttctctttctgtca 92



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 12 tgacagaagagagtgagcatatgcaagcaattgtata 48
          ||||||||||||||||||| | |||  ||||||||||
Sbjct: 1  tgacagaagagagtgagcacacgcacacaattgtata 37




>44793_miR156:micropc
          Length = 88

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 70/85 (82%), Gaps = 3/85 (3%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaat 71
          ||||||||||||||||| | | ||| |||||||||||| |   ||| ||||||||  | |
Sbjct: 1  tgacagaagagagtgagtacacgcaggcaattgtatagtggactatactcttgtttgagt 60

                                   
Query: 72 tatgatgcgtgtgctcacttctctt 96
          |   |||||||||||||||||||||
Sbjct: 61 t---atgcgtgtgctcacttctctt 82




>46707_miR156:micropc
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 77  tgcgtgtgctcacttctcttgctgtc 102
           |||||||||||||||||||| |||||
Sbjct: 65  tgcgtgtgctcacttctctttctgtc 90



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 13 gacagaagagagtgagcatatgcaagcaattgtata 48
          |||||||||||||||||| | |||  ||||||||||
Sbjct: 1  gacagaagagagtgagcacacgcacacaattgtata 36




>46146_miR156:micropc
          Length = 84

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 76 atgcgtgtgctcacttctctt 96
          |||||||||||||||||||||
Sbjct: 60 atgcgtgtgctcacttctctt 80




>46794_miR156:micropc
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 12 tgacagaagagagtgagcatatgc 35
          ||||||||||||||||||| ||||
Sbjct: 1  tgacagaagagagtgagcacatgc 24




>46066_miR156:micropc
          Length = 86

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 tgcgtgtgctcacttctctt 96
          ||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctt 82




>45863_miR156:micropc
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 12 tgacagaagagagtgagcatatgc 35
          ||||||||||||||||||| ||||
Sbjct: 1  tgacagaagagagtgagcacatgc 24