miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45956_miR168:micropc
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggactaattcgctgacacagccacgtggctctttttcttattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggactaattcgctgacacagccacgtggctctttttcttattg 60
Query: 61 gtttgtgagcagggattggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttgtgagcagggattggatcccgccttgcatcaactga 100
>46038_miR168:micropc
Length = 104
Score = 97.6 bits (49), Expect = 1e-21
Identities = 93/104 (89%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 56
|||||||||||||||||||| | |||||| ||||||||||| |||| || || | ||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60
Query: 57 attggtttgtgagcagggattggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attggtttgtgagcagggattggatcccgccttgcatcaactga 104
>45301_miR168:micropc
Length = 104
Score = 97.6 bits (49), Expect = 1e-21
Identities = 93/104 (89%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 56
|||||||||||||||||||| | |||||| ||||||||||| |||| || || | ||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60
Query: 57 attggtttgtgagcagggattggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attggtttgtgagcagggattggatcccgccttgcatcaactga 104
>46663_miR168:micropc
Length = 88
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 63 attggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46636_miR168:micropc
Length = 141
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 116 attggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46512_miR168:micropc
Length = 88
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 63 attggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46427_miR168:micropc
Length = 88
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 63 attggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46343_miR168:micropc
Length = 144
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 119 attggatcccgccttgcatcaactga 144
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46333_miR168:micropc
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46278_miR168:micropc
Length = 138
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 113 attggatcccgccttgcatcaactga 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46189_miR168:micropc
Length = 88
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 63 attggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45952_miR168:micropc
Length = 155
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 130 attggatcccgccttgcatcaactga 155
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45700_miR168:micropc
Length = 155
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 130 attggatcccgccttgcatcaactga 155
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45425_miR168:micropc
Length = 141
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 116 attggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45406_miR168:micropc
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45228_miR168:micropc
Length = 141
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 116 attggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45119_miR168:micropc
Length = 144
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 119 attggatcccgccttgcatcaactga 144
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45088_miR168:micropc
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>44989_miR168:micropc
Length = 138
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 113 attggatcccgccttgcatcaactga 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>44967_miR168:micropc
Length = 141
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 116 attggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>44951_miR168:micropc
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46522_miR168:micropc
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gatcccgccttgcatcaactga 100
||||||||||||||||||||||
Sbjct: 89 gatcccgccttgcatcaactga 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46406_miR168:micropc
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gatcccgccttgcatcaactga 100
||||||||||||||||||||||
Sbjct: 89 gatcccgccttgcatcaactga 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46666_miR168:micropc
Length = 125
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactga 100
||||||||||||||||||||
Sbjct: 106 tcccgccttgcatcaactga 125
>46411_miR168:micropc
Length = 145
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
>46209_miR168:micropc
Length = 133
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 ttggatcccgccttgcatcaactga 100
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
>46016_miR168:micropc
Length = 125
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactga 100
||||||||||||||||||||
Sbjct: 106 tcccgccttgcatcaactga 125
>45664_miR168:micropc
Length = 133
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 ttggatcccgccttgcatcaactga 100
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
>45247_miR168:micropc
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 ttggatcccgccttgcatcaactga 100
|||| ||||||||||||||||||||
Sbjct: 110 ttgggtcccgccttgcatcaactga 134
>45240_miR168:micropc
Length = 145
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
>44885_miR168:micropc
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 ttggatcccgccttgcatcaactga 100
|||| ||||||||||||||||||||
Sbjct: 110 ttgggtcccgccttgcatcaactga 134
>46717_miR168:micropc
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactga 100
||||||||||||||||||||
Sbjct: 77 tcccgccttgcatcaactga 96
>46366_miR168:micropc
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactga 100
||||||||||||||||||||
Sbjct: 77 tcccgccttgcatcaactga 96
>46098_miR168:micropc
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactga 100
||||||||||||||||||||
Sbjct: 82 tcccgccttgcatcaactga 101
>45758_miR168:micropc
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tcccgccttgcatcaactga 100
||||||||||||||||||||
Sbjct: 82 tcccgccttgcatcaactga 101
