miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45247_miR168:micropc
          Length = 134

 Score =  266 bits (134), Expect = 4e-72
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60

                                                                       
Query: 61  ccagcgtaccggtaaaaactaattttttacatgttgtctgtggcgtagtttgggtcccgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccagcgtaccggtaaaaactaattttttacatgttgtctgtggcgtagtttgggtcccgc 120

                         
Query: 121 cttgcatcaactga 134
           ||||||||||||||
Sbjct: 121 cttgcatcaactga 134




>46209_miR168:micropc
          Length = 133

 Score =  188 bits (95), Expect = 7e-49
 Identities = 127/136 (93%), Gaps = 5/136 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60

                                                                       
Query: 61  ccagcgtaccggtaaaaac--taattttttacatgttgtctgtggcgtagtttgggtccc 118
            |||| |||||||||||||  |  |||||||||   ||||||||||||||||||||||||
Sbjct: 61  gcagcttaccggtaaaaactttttttttttaca---tgtctgtggcgtagtttgggtccc 117

                           
Query: 119 gccttgcatcaactga 134
           ||||||||||||||||
Sbjct: 118 gccttgcatcaactga 133




>45664_miR168:micropc
          Length = 133

 Score =  188 bits (95), Expect = 7e-49
 Identities = 127/136 (93%), Gaps = 5/136 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60

                                                                       
Query: 61  ccagcgtaccggtaaaaac--taattttttacatgttgtctgtggcgtagtttgggtccc 118
            |||| |||||||||||||  |  |||||||||   ||||||||||||||||||||||||
Sbjct: 61  gcagcttaccggtaaaaactttttttttttaca---tgtctgtggcgtagtttgggtccc 117

                           
Query: 119 gccttgcatcaactga 134
           ||||||||||||||||
Sbjct: 118 gccttgcatcaactga 133




>46666_miR168:micropc
          Length = 125

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
          ||||||||||||||||||||||| |||||||||| |||||| ||  ||||||||| ||||
Sbjct: 1  tcgcttggtgcaggtcgggacctgcctcgccggcgacaatgacgtcagctgacggtgacg 60




>46016_miR168:micropc
          Length = 125

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
          ||||||||||||||||||||||| |||||||||| |||||| ||  ||||||||| ||||
Sbjct: 1  tcgcttggtgcaggtcgggacctgcctcgccggcgacaatgacgtcagctgacggtgacg 60




>46411_miR168:micropc
          Length = 145

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tcgcttggtgcaggtcgggacct 23
          |||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggacct 23



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 109 tttgggtcccgccttgcatcaactga 134
           ||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145




>45240_miR168:micropc
          Length = 145

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tcgcttggtgcaggtcgggacct 23
          |||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggacct 23



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 109 tttgggtcccgccttgcatcaactga 134
           ||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145




>46663_miR168:micropc
          Length = 88

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 64  ttggatcccgccttgcatcaactga 88



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46636_miR168:micropc
          Length = 141

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46512_miR168:micropc
          Length = 88

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 64  ttggatcccgccttgcatcaactga 88



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46427_miR168:micropc
          Length = 88

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 64  ttggatcccgccttgcatcaactga 88



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46343_miR168:micropc
          Length = 144

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 120 ttggatcccgccttgcatcaactga 144



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46333_miR168:micropc
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46278_miR168:micropc
          Length = 138

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 114 ttggatcccgccttgcatcaactga 138



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46189_miR168:micropc
          Length = 88

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 64  ttggatcccgccttgcatcaactga 88



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46038_miR168:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 80  ttggatcccgccttgcatcaactga 104



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45956_miR168:micropc
          Length = 100

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tcgcttggtgcaggtcgggac 21
          |||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggac 21



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 76  ttggatcccgccttgcatcaactga 100




>45952_miR168:micropc
          Length = 155

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 131 ttggatcccgccttgcatcaactga 155



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45700_miR168:micropc
          Length = 155

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 131 ttggatcccgccttgcatcaactga 155



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45425_miR168:micropc
          Length = 141

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45406_miR168:micropc
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45301_miR168:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 80  ttggatcccgccttgcatcaactga 104



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45228_miR168:micropc
          Length = 141

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45119_miR168:micropc
          Length = 144

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 120 ttggatcccgccttgcatcaactga 144



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45088_miR168:micropc
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>44989_miR168:micropc
          Length = 138

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 114 ttggatcccgccttgcatcaactga 138



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>44967_miR168:micropc
          Length = 141

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>44951_miR168:micropc
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>44865_miR168:micropc
          Length = 100

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tcgcttggtgcaggtcgggac 21
          |||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggac 21



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 76  ttggatcccgccttgcatcaactga 100




>46717_miR168:micropc
          Length = 96

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcccgccttgcatcaactga 134
           ||||||||||||||||||||
Sbjct: 77  tcccgccttgcatcaactga 96




>46522_miR168:micropc
          Length = 110

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcccgccttgcatcaactga 134
           ||||||||||||||||||||
Sbjct: 91  tcccgccttgcatcaactga 110




>46406_miR168:micropc
          Length = 110

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcccgccttgcatcaactga 134
           ||||||||||||||||||||
Sbjct: 91  tcccgccttgcatcaactga 110




>46366_miR168:micropc
          Length = 96

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcccgccttgcatcaactga 134
           ||||||||||||||||||||
Sbjct: 77  tcccgccttgcatcaactga 96




>46098_miR168:micropc
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcccgccttgcatcaactga 134
           ||||||||||||||||||||
Sbjct: 82  tcccgccttgcatcaactga 101




>45758_miR168:micropc
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcccgccttgcatcaactga 134
           ||||||||||||||||||||
Sbjct: 82  tcccgccttgcatcaactga 101