miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45247_miR168:micropc
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
Query: 61 ccagcgtaccggtaaaaactaattttttacatgttgtctgtggcgtagtttgggtcccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccagcgtaccggtaaaaactaattttttacatgttgtctgtggcgtagtttgggtcccgc 120
Query: 121 cttgcatcaactga 134
||||||||||||||
Sbjct: 121 cttgcatcaactga 134
>46209_miR168:micropc
Length = 133
Score = 188 bits (95), Expect = 7e-49
Identities = 127/136 (93%), Gaps = 5/136 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
Query: 61 ccagcgtaccggtaaaaac--taattttttacatgttgtctgtggcgtagtttgggtccc 118
|||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct: 61 gcagcttaccggtaaaaactttttttttttaca---tgtctgtggcgtagtttgggtccc 117
Query: 119 gccttgcatcaactga 134
||||||||||||||||
Sbjct: 118 gccttgcatcaactga 133
>45664_miR168:micropc
Length = 133
Score = 188 bits (95), Expect = 7e-49
Identities = 127/136 (93%), Gaps = 5/136 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
Query: 61 ccagcgtaccggtaaaaac--taattttttacatgttgtctgtggcgtagtttgggtccc 118
|||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct: 61 gcagcttaccggtaaaaactttttttttttaca---tgtctgtggcgtagtttgggtccc 117
Query: 119 gccttgcatcaactga 134
||||||||||||||||
Sbjct: 118 gccttgcatcaactga 133
>46666_miR168:micropc
Length = 125
Score = 71.9 bits (36), Expect = 1e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
||||||||||||||||||||||| |||||||||| |||||| || ||||||||| ||||
Sbjct: 1 tcgcttggtgcaggtcgggacctgcctcgccggcgacaatgacgtcagctgacggtgacg 60
>46016_miR168:micropc
Length = 125
Score = 71.9 bits (36), Expect = 1e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
||||||||||||||||||||||| |||||||||| |||||| || ||||||||| ||||
Sbjct: 1 tcgcttggtgcaggtcgggacctgcctcgccggcgacaatgacgtcagctgacggtgacg 60
>46411_miR168:micropc
Length = 145
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacct 23
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 tttgggtcccgccttgcatcaactga 134
||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145
>45240_miR168:micropc
Length = 145
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacct 23
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 tttgggtcccgccttgcatcaactga 134
||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145
>46663_miR168:micropc
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 64 ttggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46636_miR168:micropc
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46512_miR168:micropc
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 64 ttggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46427_miR168:micropc
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 64 ttggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46343_miR168:micropc
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 120 ttggatcccgccttgcatcaactga 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46333_miR168:micropc
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46278_miR168:micropc
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 114 ttggatcccgccttgcatcaactga 138
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46189_miR168:micropc
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 64 ttggatcccgccttgcatcaactga 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46038_miR168:micropc
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 80 ttggatcccgccttgcatcaactga 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45956_miR168:micropc
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 76 ttggatcccgccttgcatcaactga 100
>45952_miR168:micropc
Length = 155
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 131 ttggatcccgccttgcatcaactga 155
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45700_miR168:micropc
Length = 155
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 131 ttggatcccgccttgcatcaactga 155
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45425_miR168:micropc
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45406_miR168:micropc
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45301_miR168:micropc
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 80 ttggatcccgccttgcatcaactga 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45228_miR168:micropc
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45119_miR168:micropc
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 120 ttggatcccgccttgcatcaactga 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>45088_miR168:micropc
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>44989_miR168:micropc
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 114 ttggatcccgccttgcatcaactga 138
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>44967_miR168:micropc
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 117 ttggatcccgccttgcatcaactga 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>44951_miR168:micropc
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>44865_miR168:micropc
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggac 21
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 ttgggtcccgccttgcatcaactga 134
|||| ||||||||||||||||||||
Sbjct: 76 ttggatcccgccttgcatcaactga 100
>46717_miR168:micropc
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 77 tcccgccttgcatcaactga 96
>46522_miR168:micropc
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 91 tcccgccttgcatcaactga 110
>46406_miR168:micropc
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 91 tcccgccttgcatcaactga 110
>46366_miR168:micropc
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 77 tcccgccttgcatcaactga 96
>46098_miR168:micropc
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 82 tcccgccttgcatcaactga 101
>45758_miR168:micropc
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 82 tcccgccttgcatcaactga 101