miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46175_miR156:micropc
Length = 92
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 61
Query: 61 atgatgcgtgtgctcacttctcttgctgtc 90
||||||||||||||||||||||||||||||
Sbjct: 62 atgatgcgtgtgctcacttctcttgctgtc 91
>46798_miR156:micropc
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 79/90 (87%), Gaps = 6/90 (6%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 60
||||||||||||||||||||||||| ||||||||||||||| ||| | ||||| |||
Sbjct: 2 gacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgt--aaat- 58
Query: 61 atgatgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||||||||||
Sbjct: 59 ---atgcgtgtgctcacttctcttgctgtc 85
>45125_miR156:micropc
Length = 84
Score = 83.8 bits (42), Expect = 2e-17
Identities = 79/90 (87%), Gaps = 6/90 (6%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 60
||||||||||||||||||||||||| ||||||||||||||| ||| | ||||| |||
Sbjct: 1 gacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgt--aaat- 57
Query: 61 atgatgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||||||||||
Sbjct: 58 ---atgcgtgtgctcacttctcttgctgtc 84
>45582_miR156:micropc
Length = 89
Score = 75.8 bits (38), Expect = 5e-15
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||||||||||||||||||||
Sbjct: 61 tt---atgcgtgtgctcacttctcttgctgtc 89
>45113_miR156:micropc
Length = 89
Score = 75.8 bits (38), Expect = 5e-15
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||||||||||||||||||||
Sbjct: 61 tt---atgcgtgtgctcacttctcttgctgtc 89
>45062_miR156:micropc
Length = 91
Score = 75.8 bits (38), Expect = 5e-15
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||||||||||||||||||||
Sbjct: 62 tt---atgcgtgtgctcacttctcttgctgtc 90
>45047_miR156:micropc
Length = 91
Score = 75.8 bits (38), Expect = 5e-15
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||||||||||||||||||||
Sbjct: 62 tt---atgcgtgtgctcacttctcttgctgtc 90
>45810_miR156:micropc
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 80/92 (86%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||| ||||||||||||||||
Sbjct: 62 tt---atgcgtgtgcccacttctcttgctgtc 90
>45659_miR156:micropc
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 80/92 (86%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||| ||||||||||||||||
Sbjct: 61 tt---atgcgtgtgcccacttctcttgctgtc 89
>45528_miR156:micropc
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 80/92 (86%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||| | | | ||| | |||||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 60
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||||||||||||||||||||
Sbjct: 61 tt---atgcgtgtgctcacttctcttgctgtc 89
>44842_miR156:micropc
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 80/92 (86%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
||||||||||||||||||||||| ||||||||||||| | | | ||| | |||||| ||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 61
Query: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
|| |||||||||||||||||||||||||||
Sbjct: 62 tt---atgcgtgtgctcacttctcttgctgtc 90
>46069_miR156:micropc
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 77/91 (84%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaat 59
|||||||||||||||||| | || |||| |||||| ||||| || ||||||||| |||
Sbjct: 1 gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 60
Query: 60 tatgatgcgtgtgctcacttctcttgctgtc 90
|||| |||||||||||||||||| |||||
Sbjct: 61 tatg---cgtgtgctcacttctctttctgtc 88
>45385_miR156:micropc
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 77/91 (84%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaat 59
|||||||||||||||||| | || |||| |||||| ||||| || ||||||||| |||
Sbjct: 2 gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 61
Query: 60 tatgatgcgtgtgctcacttctcttgctgtc 90
|||| |||||||||||||||||| |||||
Sbjct: 62 tatg---cgtgtgctcacttctctttctgtc 89
>45182_miR156:micropc
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 77/91 (84%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaat 59
|||||||||||||||||| | || |||| |||||| ||||| || ||||||||| |||
Sbjct: 2 gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 61
Query: 60 tatgatgcgtgtgctcacttctcttgctgtc 90
|||| |||||||||||||||||| |||||
Sbjct: 62 tatg---cgtgtgctcacttctctttctgtc 89
>46842_miR156:micropc
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 70/83 (84%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 3 cagaagagagtgagcatatgcaagcaattgtatagagagat-atgctcttgttgtaatta 61
|||||||||||||||| | || |||| |||||| ||||| || ||||||||| |||||
Sbjct: 1 cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 60
Query: 62 tgatgcgtgtgctcacttctctt 84
|| ||||||||||||||||||
Sbjct: 61 tg---cgtgtgctcacttctctt 80
>46803_miR156:micropc
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 76/91 (83%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagaga-tatgctcttgttgtaat 59
|||||||||||||||||| || |||| ||||| ||||| ||| ||||||||| |||
Sbjct: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
Query: 60 tatgatgcgtgtgctcacttctcttgctgtc 90
| ||||||||||||||||||||| |||||
Sbjct: 61 t---atgcgtgtgctcacttctctttctgtc 88
>46709_miR156:micropc
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 76/91 (83%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagaga-tatgctcttgttgtaat 59
|||||||||||||||||| || |||| ||||| ||||| ||| ||||||||| |||
Sbjct: 2 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 61
Query: 60 tatgatgcgtgtgctcacttctcttgctgtc 90
| ||||||||||||||||||||| |||||
Sbjct: 62 t---atgcgtgtgctcacttctctttctgtc 89
>46151_miR156:micropc
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatag 37
||||||||||||||||||| ||| ||||||||||||
Sbjct: 1 gacagaagagagtgagcatccgcaggcaattgtatag 37
>46707_miR156:micropc
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||| |||||
Sbjct: 65 tgcgtgtgctcacttctctttctgtc 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtata 36
|||||||||||||||||| | ||| ||||||||||
Sbjct: 1 gacagaagagagtgagcacacgcacacaattgtata 36
>46153_miR156:micropc
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||| |||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtc 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtata 36
|||||||||||||||||| | ||| ||||||||||
Sbjct: 2 gacagaagagagtgagcacacgcacacaattgtata 37
>45524_miR156:micropc
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||| |||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtc 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtata 36
|||||||||||||||||| | ||| ||||||||||
Sbjct: 2 gacagaagagagtgagcacacgcacacaattgtata 37
>44793_miR156:micropc
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 69/84 (82%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 60
|||||||||||||||| | | ||| |||||||||||| | ||| |||||||| | ||
Sbjct: 2 gacagaagagagtgagtacacgcaggcaattgtatagtggactatactcttgtttgagtt 61
Query: 61 atgatgcgtgtgctcacttctctt 84
|||||||||||||||||||||
Sbjct: 62 ---atgcgtgtgctcacttctctt 82
>46146_miR156:micropc
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 atgcgtgtgctcacttctctt 84
|||||||||||||||||||||
Sbjct: 60 atgcgtgtgctcacttctctt 80
>46066_miR156:micropc
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctctt 84
||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctt 82
